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ubiquitin_C-terminal_hydrolase

Euk-Vir

Ostreococcus_tauri_virus_2

ubiquitin_C-terminal_hydrolase__YP_004063579__Ostreococcus_tauri_virus_2__696472

Identity

Accession:
YP_004063579 ↗
Protein ID:
ubiquitin_C-terminal_hydrolase
Kingdom:
euk

Quality

78.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D2 medium residues 44-153
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00443.36 best UCH 56.8 3.80e-15 96.4% 42.1%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.92 88.0 5.98e-01 100.0% 43.4%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.91 86.0 6.02e-01 99.1% 43.6%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.91 86.0 6.01e-01 100.0% 39.3%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.90 85.0 5.92e-01 98.2% 40.3%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.90 86.0 5.84e-01 100.0% 38.3%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.89 82.0 5.78e-01 97.3% 41.7%
3ihpA03 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.87 83.0 5.66e-01 100.0% 36.1%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.86 81.0 5.74e-01 100.0% 39.3%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.85 80.0 5.66e-01 100.0% 37.7%
5gviA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.85 78.0 5.43e-01 97.3% 35.2%
2k3oA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.58 47.0 4.50e-01 88.2% 92.2%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.57 35.0 4.02e-01 91.8% 84.6%
1pujA02 1.10.1580.10 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › 0.53 34.0 3.66e-01 78.2% 77.4%
3am6A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 44.0 3.55e-01 92.7% 93.8%
1pulA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 36.0 3.69e-01 91.8% 74.8%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.51 36.0 3.90e-01 87.3% 92.0%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 33.0 3.46e-01 94.5% 71.3%
1euvA01 1.10.418.20 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › 0.50 35.0 3.63e-01 72.7% 96.2%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3404995 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.95 91.0 6.09e-01 100.0% 40.3%
4369043 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.94 91.0 6.11e-01 100.0% 37.5%
4000435 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.94 90.0 5.91e-01 100.0% 39.0%
3768984 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.93 90.0 5.81e-01 100.0% 38.5%
3864688 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.93 89.0 6.02e-01 100.0% 41.2%
3469952 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.93 89.0 6.02e-01 100.0% 46.1%
3750815 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.93 89.0 5.88e-01 100.0% 34.7%
4011568 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.93 89.0 6.05e-01 100.0% 48.7%
3529004 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.93 89.0 6.06e-01 100.0% 43.3%
3723169 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.93 89.0 5.99e-01 100.0% 47.2%
3600855 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.93 89.0 5.72e-01 100.0% 36.0%
3255440 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 89.0 5.92e-01 100.0% 33.7%
3179039 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 88.0 5.82e-01 100.0% 39.9%
3236014 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 88.0 6.06e-01 100.0% 46.2%
3743825 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 88.0 6.12e-01 100.0% 41.6%
3358186 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 88.0 5.94e-01 100.0% 39.3%
3783065 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 88.0 5.88e-01 100.0% 47.6%
3382767 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.92 88.0 6.02e-01 100.0% 41.5%
3418449 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 88.0 5.64e-01 100.0% 33.6%
3594089 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.92 88.0 6.01e-01 100.0% 44.5%
3652683 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 88.0 5.79e-01 100.0% 37.1%
3628877 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 88.0 5.89e-01 100.0% 37.2%
3510146 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 88.0 5.87e-01 100.0% 43.6%
3246511 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 88.0 6.01e-01 100.0% 46.7%
3636498 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 87.0 5.92e-01 100.0% 37.4%
3237895 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 88.0 5.99e-01 100.0% 41.8%
4017540 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 88.0 6.00e-01 100.0% 41.5%
3737025 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 88.0 5.88e-01 100.0% 45.6%
3463250 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 87.0 6.02e-01 100.0% 36.3%
3508437 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.92 87.0 5.87e-01 100.0% 35.2%
4029745 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.92 88.0 5.93e-01 100.0% 46.8%
3630851 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 87.0 5.69e-01 100.0% 46.8%
3743062 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 87.0 5.61e-01 100.0% 36.1%
3460464 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.91 87.0 6.00e-01 100.0% 41.2%
3875068 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 87.0 5.63e-01 100.0% 40.0%
3361220 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 87.0 5.77e-01 100.0% 34.7%
3614286 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 87.0 5.90e-01 100.0% 43.5%
3274867 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 87.0 6.19e-01 100.0% 43.2%
3694580 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 86.0 5.72e-01 100.0% 38.6%
3368190 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 87.0 5.87e-01 100.0% 37.0%
3940760 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 87.0 6.03e-01 100.0% 46.6%
3800852 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.91 86.0 5.74e-01 100.0% 44.3%
3438447 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 87.0 6.57e-01 100.0% 56.5%
3500540 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 86.0 7.45e-01 100.0% 86.3%
3911651 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 87.0 5.85e-01 100.0% 45.1%
3921471 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 87.0 5.82e-01 100.0% 38.6%
3718923 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 87.0 5.88e-01 100.0% 45.0%
3610290 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 87.0 5.62e-01 100.0% 45.5%
3490907 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 86.0 5.73e-01 100.0% 39.2%
3276495 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 87.0 5.78e-01 100.0% 37.0%
4101918 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.91 86.0 5.72e-01 100.0% 45.3%
4613056 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.90 86.0 5.52e-01 100.0% 32.7%
3903582 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.90 86.0 5.78e-01 100.0% 45.1%
3272442 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.90 86.0 5.91e-01 100.0% 38.8%
3550695 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.90 85.0 5.58e-01 100.0% 44.7%
3677716 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.90 85.0 5.85e-01 100.0% 37.5%
3717786 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.89 85.0 5.36e-01 100.0% 37.9%
3710203 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.89 85.0 5.46e-01 100.0% 41.6%
3649668 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.89 85.0 5.77e-01 100.0% 36.5%
3472537 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.89 85.0 5.61e-01 100.0% 45.3%
3460619 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.89 85.0 5.61e-01 100.0% 33.7%
3596871 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.89 85.0 5.46e-01 100.0% 40.8%
3390045 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.89 85.0 5.72e-01 100.0% 43.8%
4490994 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.89 84.0 5.56e-01 100.0% 39.3%
3460558 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.89 84.0 5.96e-01 100.0% 43.7%
3366188 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.89 84.0 5.89e-01 100.0% 42.3%
3775802 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.88 84.0 6.16e-01 100.0% 50.4%
3660442 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.88 83.0 5.80e-01 100.0% 46.3%
3517484 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.88 83.0 5.55e-01 100.0% 42.4%
3598933 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.88 83.0 5.35e-01 100.0% 33.3%
3403710 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.88 83.0 5.52e-01 100.0% 47.4%
3874531 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.87 83.0 5.22e-01 100.0% 30.9%
3793204 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.87 82.0 5.84e-01 100.0% 45.6%
3619549 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.87 83.0 5.40e-01 100.0% 37.2%
3622020 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.87 82.0 5.67e-01 100.0% 41.9%
3607918 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.86 81.0 5.20e-01 100.0% 29.7%
3425274 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.86 80.0 7.03e-01 99.1% 81.3%
3649722 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.85 80.0 5.18e-01 100.0% 36.0%
3507107 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.84 79.0 5.52e-01 100.0% 50.5%
3272932 219.1.1.50 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.84 79.0 5.03e-01 100.0% 27.6%
3931206 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 77.0 5.74e-01 100.0% 60.8%
3681279 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 78.0 5.82e-01 100.0% 62.8%
3936499 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.83 77.0 4.52e-01 100.0% 20.0%
3489525 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.82 77.0 5.84e-01 100.0% 45.8%
3576490 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.82 76.0 4.47e-01 100.0% 15.9%
3330537 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.82 77.0 6.32e-01 100.0% 62.7%
3801207 219.1.1.50 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.81 75.0 4.87e-01 100.0% 27.6%
3257853 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 76.0 5.39e-01 100.0% 37.6%
3219196 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.79 74.0 5.35e-01 100.0% 40.0%
3494653 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.79 73.0 6.16e-01 100.0% 84.0%
3483086 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.79 73.0 5.01e-01 100.0% 48.0%
3645385 108.1.1.1 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 0.58 37.0 3.53e-01 85.5% 53.1%
D3 medium residues 220-304
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00443.36 best UCH 38.1 1.90e-09 92.9% 24.0%