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ubiquitin_E3_ligase_ICP0

Euk-Vir

Ateline_alphaherpesvirus_1

ubiquitin_E3_ligase_ICP0__YP_009361938__Ateline_alphaherpesvirus_1__35243

Identity

Accession:
YP_009361938 ↗
Protein ID:
ubiquitin_E3_ligase_ICP0
Kingdom:
euk

Quality

43.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Ateline_alphaherpesvirus_1

TaxID: 35243

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 213-315
PDB
Domain cluster: rep: immediate_early_protein_ICP0__YP_009230128__Leporid_alphaherpesvirus_4__481315__D88-181
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00097.32 best zf-C3HC4 26.5 6.40e-06 26.2% 67.5%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bamA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.62 50.0 4.06e-01 88.3% 77.2%
3c9fA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.61 50.0 3.58e-01 90.3% 61.6%
1t70A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.61 50.0 3.86e-01 92.2% 76.5%
5khaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.61 49.0 3.71e-01 88.3% 77.3%
3iveA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.57 46.0 3.39e-01 91.3% 79.3%
4oc8A02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 43.0 3.73e-01 85.4% 80.8%
8d89A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 47.0 3.30e-01 100.0% 58.4%
4f0qA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 43.0 3.58e-01 90.3% 60.9%
2gruA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 43.0 3.72e-01 92.2% 87.6%
2fokA03 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.52 40.0 3.49e-01 86.4% 82.3%
1pjcA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 41.0 3.45e-01 86.4% 95.5%
2cjwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 3.35e-01 83.5% 74.2%
2czrA01 3.40.1350.70 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain 0.51 41.0 4.11e-01 90.3% 85.8%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3344003 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.72 41.0 4.59e-01 71.8% 72.5%
4175432 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.61 50.0 3.69e-01 90.3% 90.2%
3839191 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.61 50.0 3.71e-01 91.3% 77.2%
4978967 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.61 49.0 3.59e-01 87.4% 77.1%
4393621 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.60 49.0 3.67e-01 90.3% 92.1%
4556568 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.59 51.0 3.73e-01 95.1% 69.8%
4623213 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.59 47.0 3.67e-01 88.3% 84.7%
5052189 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 45.0 3.92e-01 83.5% 81.9%
4470571 2002.1.1.154 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_1 0.56 46.0 3.09e-01 90.3% 88.8%
5045709 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 42.0 3.73e-01 82.5% 78.6%
430852 2002.1.1.154 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_1 0.55 47.0 3.22e-01 99.0% 68.4%
5056683 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.53 41.0 3.36e-01 83.5% 82.0%
None — 0.53 43.0 3.75e-01 92.2% 87.1%
3959689 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.52 28.0 3.14e-01 75.7% 66.3%
4998552 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.52 39.0 3.19e-01 82.5% 82.4%
4997998 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.50 37.0 3.21e-01 81.6% 85.0%
D2 medium residues 579-648
PDB