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ubiquitin_E3_ligase_ICP0
Euk-VirCervid_alphaherpesvirus_3
ubiquitin_E3_ligase_ICP0__YP_010087603__Cervid_alphaherpesvirus_3__2115790
Identity
- Accession:
- YP_010087603 ↗
- Protein ID:
- ubiquitin_E3_ligase_ICP0
- Kingdom:
- euk
Quality
45.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Cervid_alphaherpesvirus_3
TaxID: 2115790
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-72
Domain cluster:
rep: ubiquitin_E3_ligase_ICP0__YP_068377__Suid_alphaherpesvirus_1__10345__D13-62
Pfam (5)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13920.13 best | zf-C3HC4_3 | 30.3 | 4.20e-07 | 72.0% | 65.3% |
| PF13639.13 | zf-RING_2 | 34.4 | 2.90e-08 | 60.0% | 63.6% |
| PF13923.13 | zf-C3HC4_2 | 32.2 | 1.00e-07 | 58.0% | 65.0% |
| PF12678.14 | zf-rbx1 | 32.9 | 8.60e-08 | 58.0% | 45.5% |
| PF00097.32 | zf-C3HC4 | 36.2 | 6.10e-09 | 58.0% | 67.5% |
D2
medium
residues 157-245
Domain cluster:
rep: ubiquitin_E3_ligase_ICP0__YP_002333544__Equid_alphaherpesvirus_9__55744__D120-192
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3v53E00 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.78 | 65.0 | 6.18e-01 | 100.0% | 77.5% |
| 2co9A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.71 | 40.0 | 3.84e-01 | 86.5% | 48.0% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.69 | 58.0 | 5.84e-01 | 100.0% | 92.2% |
| 1n5uA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.67 | 49.0 | 4.89e-01 | 78.7% | 74.4% |
| 5oklA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.66 | 52.0 | 4.99e-01 | 83.1% | 95.0% |
| 3himA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.66 | 48.0 | 3.72e-01 | 76.4% | 45.3% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 50.0 | 5.26e-01 | 86.5% | 98.8% |
| 2pv4A00 | 1.10.3440.10 | Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like | 0.63 | 43.0 | 3.71e-01 | 70.8% | 69.7% |
| 1ci4A00 | 1.10.150.40 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF | 0.62 | 48.0 | 4.90e-01 | 85.4% | 86.4% |
| 1kxpD04 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.62 | 43.0 | 4.60e-01 | 75.3% | 84.4% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.62 | 43.0 | 3.78e-01 | 73.0% | 55.6% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 49.0 | 5.13e-01 | 86.5% | 98.7% |
| 1kxpD02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.61 | 44.0 | 4.46e-01 | 79.8% | 76.1% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 46.0 | 4.34e-01 | 86.5% | 70.5% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.59 | 35.0 | 3.76e-01 | 87.6% | 69.9% |
| 3um7A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 45.0 | 4.35e-01 | 85.4% | 73.8% |
| 4akgA06 | 1.10.8.710 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain | 0.58 | 47.0 | 4.50e-01 | 91.0% | 91.6% |
| 2dbgA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 44.0 | 4.28e-01 | 85.4% | 89.3% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.57 | 40.0 | 4.09e-01 | 73.0% | 93.1% |
| 1tzvA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.56 | 47.0 | 4.13e-01 | 97.8% | 62.4% |
| 4xxiA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.55 | 47.0 | 4.13e-01 | 100.0% | 63.3% |
| 2gkmA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 48.0 | 4.30e-01 | 100.0% | 73.2% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 38.0 | 3.84e-01 | 73.0% | 93.4% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.54 | 46.0 | 4.09e-01 | 100.0% | 65.2% |
| 2dfkC01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.54 | 43.0 | 3.29e-01 | 87.6% | 73.6% |
| 3rh9A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.53 | 46.0 | 3.29e-01 | 100.0% | 43.6% |
| 2es9A00 | 1.20.1290.30 | Mainly Alpha › Up-down Bundle › AhpD-like › | 0.53 | 39.0 | 3.79e-01 | 77.5% | 100.0% |
| 4wbyA02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.53 | 41.0 | 3.06e-01 | 97.8% | 31.8% |
| 5hfiA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 43.0 | 3.47e-01 | 95.5% | 71.8% |
| 1kz7A01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.52 | 36.0 | 2.88e-01 | 73.0% | 73.6% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.52 | 42.0 | 4.24e-01 | 91.0% | 98.8% |
| 4ojmX02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.52 | 36.0 | 3.47e-01 | 73.0% | 63.8% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 40.0 | 3.89e-01 | 85.4% | 76.8% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.51 | 43.0 | 3.49e-01 | 95.5% | 84.0% |
| 2zy9A03 | 1.10.357.20 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain | 0.50 | 41.0 | 3.34e-01 | 91.0% | 68.4% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4078112 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.81 | 67.0 | 7.08e-01 | 98.9% | 100.0% |
| 3997361 | 592.1.1.5 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26084 | 0.80 | 68.0 | 7.17e-01 | 95.5% | 100.0% |
| 3743178 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.80 | 67.0 | 5.76e-01 | 96.6% | 59.3% |
| 3407880 | 592.1.1.5 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26084 | 0.78 | 64.0 | 5.80e-01 | 96.6% | 65.8% |
| 3784553 | 592.1.1.6 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 | 0.77 | 67.0 | 6.86e-01 | 100.0% | 97.6% |
| 3403783 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.76 | 64.0 | 5.61e-01 | 96.6% | 62.5% |
| 3478409 | 592.1.1.5 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26084 | 0.76 | 69.0 | 6.73e-01 | 96.6% | 92.6% |
| 4016803 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.76 | 61.0 | 6.11e-01 | 86.5% | 98.9% |
| 3199378 | 6088.1.1.1 ↗ | alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › 4HB | 0.66 | 55.0 | 5.54e-01 | 96.6% | 91.1% |
| 3328712 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.64 | 57.0 | 4.25e-01 | 100.0% | 51.3% |
| 4957365 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.63 | 44.0 | 4.17e-01 | 74.2% | 78.2% |
| 4666538 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.60 | 43.0 | 3.92e-01 | 82.0% | 54.4% |
| 4023297 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.60 | 51.0 | 3.65e-01 | 96.6% | 48.1% |
| 3260740 | 103.4.1.2 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M | 0.60 | 42.0 | 4.27e-01 | 74.2% | 98.9% |
| 1113428 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.59 | 47.0 | 4.70e-01 | 87.6% | 86.8% |
| 5039202 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.59 | 50.0 | 3.79e-01 | 100.0% | 48.8% |
| 3615306 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.58 | 46.0 | 3.35e-01 | 89.9% | 41.4% |
| 5042923 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.58 | 46.0 | 4.29e-01 | 88.8% | 84.3% |
| 169843 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.57 | 43.0 | 4.22e-01 | 82.0% | 99.0% |
| 3614514 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.57 | 45.0 | 3.67e-01 | 89.9% | 58.4% |
| 3932144 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.56 | 38.0 | 3.58e-01 | 70.8% | 93.0% |
| 3947473 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.56 | 45.0 | 3.87e-01 | 89.9% | 83.3% |
| 5051474 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 42.0 | 4.46e-01 | 89.9% | 100.0% |
| 3190112 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.53 | 44.0 | 3.04e-01 | 95.5% | 42.2% |
| 4184996 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.53 | 38.0 | 2.74e-01 | 77.5% | 50.9% |
| 3242517 | 4009.1.1.3 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › KTI12 | 0.52 | 37.0 | 3.93e-01 | 76.4% | 88.0% |
| 3616358 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.51 | 35.0 | 3.89e-01 | 76.4% | 91.4% |