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ubiquitin_E3_ligase_ICP0
Euk-VirSuid_alphaherpesvirus_1
ubiquitin_E3_ligase_ICP0__YP_068377__Suid_alphaherpesvirus_1__10345
Identity
- Accession:
- YP_068377 ↗
- Protein ID:
- ubiquitin_E3_ligase_ICP0
- Kingdom:
- euk
Quality
57.3
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Suid_alphaherpesvirus_1
TaxID: 10345
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 13-62
Domain cluster:
representative
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13920.13 best | zf-C3HC4_3 | 29.2 | 8.80e-07 | 72.0% | 65.3% |
| PF13639.13 | zf-RING_2 | 35.0 | 1.90e-08 | 60.0% | 63.6% |
| PF00097.32 | zf-C3HC4 | 29.8 | 6.10e-07 | 58.0% | 67.5% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cklA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.92 | 71.0 | 5.52e-01 | 82.0% | 48.0% |
| 3ng2B00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.90 | 59.0 | 5.27e-01 | 70.0% | 50.7% |
| 4aycA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.89 | 67.0 | 5.55e-01 | 82.0% | 48.2% |
| 5d0iB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.89 | 61.0 | 6.13e-01 | 100.0% | 70.6% |
| 2y43A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.87 | 68.0 | 5.46e-01 | 82.0% | 48.9% |
| 4r7eA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.86 | 66.0 | 5.86e-01 | 82.0% | 62.3% |
| 2yhoE00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.85 | 60.0 | 5.30e-01 | 80.0% | 52.9% |
| 2lxhC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.84 | 55.0 | 5.28e-01 | 70.0% | 58.6% |
| 3vk6A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.84 | 67.0 | 6.32e-01 | 86.0% | 74.6% |
| 2ma6A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.84 | 65.0 | 6.08e-01 | 84.0% | 68.9% |
| 2csyA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.82 | 63.0 | 5.90e-01 | 82.0% | 68.3% |
| 2lgvA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.82 | 61.0 | 4.74e-01 | 94.0% | 39.0% |
| 4wz0A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.81 | 62.0 | 4.76e-01 | 82.0% | 38.5% |
| 1rmdA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.81 | 64.0 | 5.24e-01 | 84.0% | 50.0% |
| 5dinA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.81 | 61.0 | 4.57e-01 | 82.0% | 35.0% |
| 3lrqB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.80 | 60.0 | 5.13e-01 | 82.0% | 55.0% |
| 2bayE00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.79 | 61.0 | 5.79e-01 | 84.0% | 74.6% |
| 5hkxA04 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.78 | 57.0 | 6.03e-01 | 80.0% | 90.9% |
| 6k2kA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.74 | 54.0 | 5.27e-01 | 80.0% | 70.2% |
| 2fd4A00 | 3.30.40.110 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain | 0.67 | 50.0 | 4.04e-01 | 84.0% | 54.3% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 38.0 | 3.72e-01 | 72.0% | 100.0% |
| 4makB00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 4.00e-01 | 100.0% | 92.1% |
| 2d8sA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 39.0 | 3.46e-01 | 100.0% | 53.8% |
| 8evkA01 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.52 | 39.0 | 3.26e-01 | 92.0% | 92.6% |
| 1lgpA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.50 | 34.0 | 2.76e-01 | 90.0% | 32.7% |
ECOD (89)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3896838 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.99 | 72.0 | 7.28e-01 | 76.0% | 76.0% |
| 3478408 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.99 | 92.0 | 7.63e-01 | 98.0% | 61.3% |
| 3414074 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.98 | 73.0 | 7.39e-01 | 78.0% | 78.0% |
| 3377397 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.98 | 70.0 | 6.07e-01 | 74.0% | 52.9% |
| 3806843 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.97 | 65.0 | 6.92e-01 | 70.0% | 77.8% |
| 3263768 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.96 | 71.0 | 6.63e-01 | 80.0% | 65.0% |
| 3894502 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.94 | 71.0 | 6.89e-01 | 82.0% | 72.7% |
| 3785325 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.93 | 61.0 | 4.87e-01 | 100.0% | 37.8% |
| 3637145 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.93 | 87.0 | 6.87e-01 | 98.0% | 57.8% |
| 3620968 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.92 | 70.0 | 7.05e-01 | 80.0% | 80.0% |
| 3267109 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.92 | 67.0 | 6.03e-01 | 76.0% | 60.0% |
| 3392386 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.91 | 71.0 | 6.43e-01 | 82.0% | 66.2% |
| 3242811 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.91 | 70.0 | 5.35e-01 | 82.0% | 40.0% |
| 3808933 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.91 | 60.0 | 5.24e-01 | 70.0% | 48.6% |
| 3254172 | 73.1.1.1 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA | 0.91 | 71.0 | 4.41e-01 | 82.0% | 17.8% |
| 3779926 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.91 | 74.0 | 6.38e-01 | 86.0% | 60.3% |
| 3217008 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.91 | 64.0 | 6.44e-01 | 74.0% | 78.0% |
| 3780886 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.91 | 70.0 | 5.07e-01 | 82.0% | 37.6% |
| 3215339 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.91 | 69.0 | 5.60e-01 | 82.0% | 47.1% |
| 3790610 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.90 | 83.0 | 7.51e-01 | 100.0% | 75.4% |
| 3721362 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.90 | 62.0 | 5.81e-01 | 72.0% | 61.7% |
| 4027994 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.90 | 70.0 | 6.32e-01 | 82.0% | 66.2% |
| 3308703 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.90 | 69.0 | 6.72e-01 | 82.0% | 74.5% |
| 3480920 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.90 | 70.0 | 5.17e-01 | 82.0% | 40.9% |
| 3805637 | 376.1.1.61 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 | 0.90 | 68.0 | 5.69e-01 | 80.0% | 52.5% |
| 3849195 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.90 | 68.0 | 4.71e-01 | 82.0% | 27.6% |
| 3791823 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.90 | 63.0 | 5.92e-01 | 98.0% | 61.7% |
| 3698554 | 376.1.1.17 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-rbx1 | 0.90 | 59.0 | 4.93e-01 | 72.0% | 42.5% |
| 4271737 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.89 | 69.0 | 5.67e-01 | 82.0% | 55.3% |
| 3573352 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.89 | 69.0 | 6.08e-01 | 82.0% | 60.0% |
| 4272127 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.89 | 69.0 | 5.42e-01 | 82.0% | 43.2% |
| 3531184 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.89 | 69.0 | 5.62e-01 | 82.0% | 48.2% |
| 3582511 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.89 | 68.0 | 5.32e-01 | 82.0% | 43.0% |
| 4014325 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.89 | 83.0 | 7.19e-01 | 98.0% | 70.0% |
| 3586298 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.89 | 80.0 | 7.22e-01 | 96.0% | 78.5% |
| 3276478 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.88 | 69.0 | 5.61e-01 | 82.0% | 49.4% |
| 3990579 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.88 | 68.0 | 5.20e-01 | 82.0% | 41.9% |
| 3490882 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.88 | 68.0 | 5.12e-01 | 82.0% | 38.2% |
| 3494512 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.88 | 68.0 | 5.84e-01 | 82.0% | 56.0% |
| 4027862 | 376.1.1.17 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-rbx1 | 0.88 | 62.0 | 5.36e-01 | 76.0% | 49.3% |
| 3818416 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.88 | 78.0 | 6.55e-01 | 96.0% | 61.3% |
| 3532763 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.88 | 68.0 | 6.56e-01 | 82.0% | 76.4% |
| 3798174 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.87 | 62.0 | 5.46e-01 | 76.0% | 52.9% |
| 3765926 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.87 | 67.0 | 4.88e-01 | 82.0% | 33.6% |
| 4876589 | 376.1.1.15 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse | 0.87 | 61.0 | 6.11e-01 | 74.0% | 76.5% |
| 3855040 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.87 | 81.0 | 6.75e-01 | 100.0% | 63.7% |
| 3253680 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.87 | 67.0 | 5.53e-01 | 82.0% | 50.6% |
| 3413488 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.86 | 62.0 | 5.47e-01 | 84.0% | 54.3% |
| 5071104 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.86 | 61.0 | 6.70e-01 | 76.0% | 100.0% |
| 3396437 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.86 | 66.0 | 5.55e-01 | 82.0% | 53.8% |
| 3346269 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.86 | 59.0 | 4.76e-01 | 100.0% | 40.0% |
| 3344003 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.85 | 78.0 | 6.58e-01 | 100.0% | 67.5% |
| 3324521 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.85 | 66.0 | 5.95e-01 | 82.0% | 63.1% |
| 3190825 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.85 | 75.0 | 7.52e-01 | 94.0% | 96.0% |
| 3246456 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.85 | 65.0 | 5.76e-01 | 82.0% | 62.9% |
| 3405623 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.85 | 65.0 | 5.17e-01 | 82.0% | 49.5% |
| 3311630 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.85 | 65.0 | 5.25e-01 | 82.0% | 50.0% |
| 3596561 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.84 | 77.0 | 6.80e-01 | 100.0% | 71.4% |
| 3913667 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.84 | 65.0 | 4.68e-01 | 82.0% | 32.3% |
| 3653237 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.84 | 65.0 | 5.58e-01 | 82.0% | 60.0% |
| 4025085 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.84 | 64.0 | 5.71e-01 | 82.0% | 58.6% |
| 3196969 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.84 | 72.0 | 6.34e-01 | 92.0% | 65.7% |
| 3273885 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.84 | 78.0 | 5.59e-01 | 100.0% | 38.8% |
| 3738043 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.84 | 78.0 | 6.14e-01 | 100.0% | 52.6% |
| 3732027 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.84 | 59.0 | 6.43e-01 | 74.0% | 95.0% |
| 3806101 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.84 | 64.0 | 6.03e-01 | 82.0% | 75.0% |
| 5065494 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.83 | 58.0 | 5.85e-01 | 76.0% | 74.0% |
| 3481026 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.83 | 64.0 | 5.16e-01 | 82.0% | 46.7% |
| 3550923 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.83 | 65.0 | 4.66e-01 | 84.0% | 31.9% |
| 3410252 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.83 | 65.0 | 5.77e-01 | 84.0% | 67.1% |
| 4945028 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.83 | 57.0 | 4.96e-01 | 100.0% | 48.6% |
| 4024500 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.82 | 65.0 | 5.04e-01 | 86.0% | 42.0% |
| 3782724 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.82 | 63.0 | 5.93e-01 | 82.0% | 72.9% |
| 148972 | 376.1.1.17 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-rbx1 | 0.82 | 61.0 | 4.74e-01 | 94.0% | 39.0% |
| 1489496 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.81 | 62.0 | 4.87e-01 | 82.0% | 41.6% |
| 3266775 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.81 | 63.0 | 5.75e-01 | 84.0% | 66.2% |
| 3476530 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.80 | 61.0 | 5.60e-01 | 82.0% | 66.2% |
| 3347073 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.80 | 61.0 | 4.86e-01 | 82.0% | 43.0% |
| 4011007 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.80 | 62.0 | 4.73e-01 | 84.0% | 39.1% |
| 3902772 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.79 | 61.0 | 5.46e-01 | 84.0% | 61.4% |
| 3266737 | 376.1.1.70 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING | 0.79 | 55.0 | 5.58e-01 | 100.0% | 74.0% |
| 3729830 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.78 | 59.0 | 5.18e-01 | 82.0% | 57.3% |
| 3221156 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.78 | 54.0 | 5.31e-01 | 98.0% | 67.3% |
| 3260234 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.78 | 59.0 | 4.35e-01 | 86.0% | 31.5% |
| 3264295 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.78 | 60.0 | 5.39e-01 | 84.0% | 61.4% |
| 3557730 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.78 | 68.0 | 5.03e-01 | 94.0% | 61.7% |
| 3786153 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.77 | 68.0 | 5.03e-01 | 94.0% | 57.4% |
| 5052621 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.76 | 55.0 | 5.36e-01 | 100.0% | 70.9% |
| 4012910 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.76 | 56.0 | 4.68e-01 | 82.0% | 46.7% |
D2
medium
residues 127-184
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.71 | 62.0 | 5.25e-01 | 100.0% | 66.0% |
| 2vk9A03 | 1.10.3730.30 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.69 | 50.0 | 4.18e-01 | 77.6% | 78.6% |
| 3g2eB00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.67 | 54.0 | 3.84e-01 | 91.4% | 92.4% |
| 4hhxA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.63 | 53.0 | 4.51e-01 | 100.0% | 76.0% |
| 2lpeA02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.63 | 54.0 | 5.09e-01 | 100.0% | 78.9% |
| 1ci4A00 | 1.10.150.40 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF | 0.63 | 52.0 | 4.61e-01 | 96.6% | 76.1% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.62 | 40.0 | 4.35e-01 | 70.7% | 82.6% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 42.0 | 3.86e-01 | 70.7% | 57.5% |
| 1vtnC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 51.0 | 4.32e-01 | 96.6% | 97.1% |
| 3kyzA00 | 3.30.450.170 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component histidine kinase, sensor domain | 0.61 | 50.0 | 4.07e-01 | 93.1% | 86.6% |
| 4wzsB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.60 | 51.0 | 4.14e-01 | 98.3% | 61.9% |
| 6tmfT00 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.59 | 48.0 | 4.71e-01 | 93.1% | 98.4% |
| 3r2kA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 43.0 | 3.16e-01 | 77.6% | 55.2% |
| 4s2rQ03 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.58 | 48.0 | 3.14e-01 | 98.3% | 81.1% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 45.0 | 3.31e-01 | 84.5% | 49.0% |
| 4eqqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 42.0 | 4.52e-01 | 94.8% | 97.9% |
| 2dk8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 43.0 | 4.23e-01 | 94.8% | 73.8% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.56 | 47.0 | 4.43e-01 | 96.6% | 91.8% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.54 | 43.0 | 3.12e-01 | 87.9% | 37.9% |
| 1yy7A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 42.0 | 3.55e-01 | 87.9% | 70.5% |
| 4f91B04 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.54 | 45.0 | 3.52e-01 | 100.0% | 53.5% |
| 3graA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.52 | 39.0 | 2.80e-01 | 84.5% | 84.3% |
| 1luwA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.51 | 38.0 | 3.69e-01 | 82.8% | 71.9% |
| 3m1cB01 | 3.30.390.170 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.50 | 40.0 | 3.23e-01 | 86.2% | 89.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3404033 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.81 | 74.0 | 5.98e-01 | 100.0% | 62.9% |
| 4026102 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.80 | 73.0 | 6.69e-01 | 100.0% | 84.0% |
| 3807088 | 592.1.1.6 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 | 0.80 | 70.0 | 6.55e-01 | 94.8% | 78.6% |
| 3661711 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.79 | 72.0 | 6.38e-01 | 100.0% | 72.5% |
| 3193662 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.71 | 61.0 | 5.55e-01 | 98.3% | 83.7% |
| 2325850 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 51.0 | 5.32e-01 | 96.6% | 96.1% |
| 3353465 | 109.4.1.1257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 | 0.66 | 51.0 | 3.74e-01 | 84.5% | 33.8% |
| 3334461 | 101.1.1.270 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 | 0.66 | 53.0 | 4.97e-01 | 96.6% | 72.0% |
| 4940797 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.66 | 48.0 | 4.22e-01 | 77.6% | 89.4% |
| 3829115 | 101.1.1.270 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 | 0.65 | 50.0 | 4.93e-01 | 94.8% | 80.0% |
| 3341091 | 101.35.1.6 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 | 0.64 | 53.0 | 5.19e-01 | 96.6% | 87.7% |
| 4995740 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.63 | 51.0 | 4.18e-01 | 98.3% | 52.0% |
| 5048987 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 47.0 | 4.89e-01 | 89.7% | 92.6% |
| 3195817 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.57 | 48.0 | 3.66e-01 | 98.3% | 39.3% |
| 3739861 | 101.1.2.198 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH | 0.56 | 44.0 | 3.64e-01 | 91.4% | 69.6% |
| 4357827 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.53 | 43.0 | 4.16e-01 | 94.8% | 79.7% |