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ubiquitin
Euk-VirMicromonas_pusilla_virus_12T
ubiquitin__YP_007676278__Micromonas_pusilla_virus_12T__755272
Identity
- Accession:
- YP_007676278 ↗
- Protein ID:
- ubiquitin
- Kingdom:
- euk
Quality
83.8
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Prasinovirus›
Micromonas_pusilla_virus_12T
TaxID: 755272
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-71
Domain cluster:
rep: IMGVR_UViG_3300021400_004370-3300021400-Ga0224422_126570053__D12-86
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11976.15 best | Rad60-SLD | 63.6 | 1.60e-17 | 100.0% | 98.6% |
| PF14560.13 | Ubiquitin_2 | 25.5 | 2.10e-05 | 98.6% | 76.7% |
| PF00240.30 | ubiquitin | 109.7 | 6.50e-32 | 98.6% | 95.8% |
D2
high
residues 91-133
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09011.17 | HMG_box_2 | 27.3 | 6.70e-06 | 100.0% | 58.3% |
| PF00505.26 best | HMG_box | 48.7 | 1.10e-12 | 100.0% | 60.9% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e6oA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.95 | 86.0 | 6.69e-01 | 100.0% | 49.4% |
| 7cyuA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.94 | 86.0 | 7.71e-01 | 100.0% | 75.4% |
| 3tmmA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.93 | 84.0 | 6.12e-01 | 100.0% | 39.4% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.93 | 81.0 | 6.67e-01 | 100.0% | 56.2% |
| 6jrpA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.92 | 82.0 | 7.21e-01 | 100.0% | 68.9% |
| 2co9A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.91 | 82.0 | 6.07e-01 | 100.0% | 42.2% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.91 | 81.0 | 7.60e-01 | 100.0% | 81.1% |
| 2lefA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.82 | 72.0 | 5.72e-01 | 100.0% | 50.0% |
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.75 | 54.0 | 5.01e-01 | 83.7% | 60.3% |
| 3f2bA05 | 6.10.50.10 | Special › Helix non-globular › Insulin-like, subunit E › | 0.63 | 49.0 | 4.79e-01 | 97.7% | 81.2% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 47.0 | 4.37e-01 | 86.0% | 82.1% |
| 3k6hA01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.56 | 45.0 | 3.16e-01 | 100.0% | 56.9% |
| 3afhA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.55 | 44.0 | 4.27e-01 | 93.0% | 82.0% |
| 3e22A03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.55 | 41.0 | 3.89e-01 | 81.4% | 85.2% |
| 5aj3N01 | 1.10.287.1480 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 38.0 | 3.09e-01 | 81.4% | 35.2% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3863510 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 1.00 | 95.0 | 7.56e-01 | 100.0% | 57.3% |
| 3767264 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.99 | 94.0 | 6.51e-01 | 100.0% | 35.8% |
| 3802347 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.99 | 93.0 | 5.32e-01 | 100.0% | 12.8% |
| 4673895 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.99 | 93.0 | 6.78e-01 | 100.0% | 43.0% |
| 4344838 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.98 | 93.0 | 7.26e-01 | 100.0% | 53.8% |
| 3506838 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.98 | 92.0 | 6.84e-01 | 100.0% | 45.3% |
| 3593421 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.98 | 92.0 | 6.95e-01 | 100.0% | 47.8% |
| 3240782 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.98 | 93.0 | 6.07e-01 | 100.0% | 28.7% |
| 3269300 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.98 | 92.0 | 7.10e-01 | 100.0% | 50.6% |
| 3771624 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.98 | 92.0 | 6.74e-01 | 100.0% | 43.0% |
| 3486557 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.98 | 88.0 | 6.92e-01 | 100.0% | 51.2% |
| 3864894 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.98 | 92.0 | 7.07e-01 | 100.0% | 50.6% |
| 4344839 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.97 | 91.0 | 6.78e-01 | 100.0% | 45.3% |
| 3268169 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.97 | 91.0 | 6.67e-01 | 100.0% | 43.0% |
| 3486506 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.97 | 91.0 | 7.33e-01 | 100.0% | 57.3% |
| 3533358 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.97 | 91.0 | 6.79e-01 | 100.0% | 45.3% |
| 3495984 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.97 | 91.0 | 6.50e-01 | 100.0% | 39.1% |
| 3705890 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.97 | 91.0 | 6.76e-01 | 100.0% | 45.3% |
| 3503437 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.97 | 90.0 | 6.98e-01 | 100.0% | 50.6% |
| 3470186 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.97 | 90.0 | 6.83e-01 | 100.0% | 47.8% |
| 3176953 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.97 | 91.0 | 7.50e-01 | 100.0% | 61.4% |
| 3930859 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.97 | 90.0 | 7.26e-01 | 100.0% | 57.3% |
| 3854605 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.97 | 90.0 | 6.42e-01 | 100.0% | 39.1% |
| 3171915 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.96 | 89.0 | 6.91e-01 | 100.0% | 50.6% |
| 3558741 | 376.1.3.80 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › HMG_box | 0.96 | 87.0 | 8.55e-01 | 97.7% | 93.3% |
| 3498339 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.95 | 87.0 | 6.78e-01 | 100.0% | 50.6% |
| 3686458 | 190.1.1.6 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › Ccdc124 | 0.95 | 81.0 | 5.84e-01 | 97.7% | 37.1% |
| 164888 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.95 | 86.0 | 6.69e-01 | 100.0% | 49.4% |
| None | — | 0.94 | 86.0 | 7.88e-01 | 100.0% | 78.2% | |
| 3503648 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.94 | 86.0 | 7.60e-01 | 100.0% | 71.7% |
| 3885705 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.94 | 86.0 | 6.72e-01 | 100.0% | 50.6% |
| 3390901 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.94 | 87.0 | 5.38e-01 | 100.0% | 21.0% |
| 4102066 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.94 | 87.0 | 6.31e-01 | 100.0% | 41.0% |
| 3398172 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.94 | 86.0 | 6.26e-01 | 100.0% | 41.0% |
| 3799090 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.94 | 83.0 | 7.09e-01 | 97.7% | 63.5% |
| 3916833 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.94 | 87.0 | 6.90e-01 | 100.0% | 53.8% |
| 3768093 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.94 | 85.0 | 6.24e-01 | 100.0% | 41.0% |
| 2665668 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.94 | 86.0 | 7.47e-01 | 100.0% | 69.4% |
| 3546996 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.93 | 85.0 | 7.08e-01 | 100.0% | 61.4% |
| 4000466 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.93 | 85.0 | 6.51e-01 | 100.0% | 47.8% |
| 4258385 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.93 | 84.0 | 6.87e-01 | 100.0% | 57.3% |
| 2010399 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.93 | 84.0 | 6.62e-01 | 100.0% | 51.2% |
| 3491886 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.93 | 84.0 | 6.89e-01 | 100.0% | 58.7% |
| 3929576 | 190.1.1.2 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › CHDNT | 0.93 | 77.0 | 6.04e-01 | 90.7% | 50.6% |
| 3520902 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.92 | 81.0 | 7.00e-01 | 100.0% | 64.6% |
| 2010400 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.92 | 82.0 | 6.85e-01 | 100.0% | 59.7% |
| 3402349 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.89 | 78.0 | 7.00e-01 | 100.0% | 71.7% |
| 3410813 | 190.1.1.5 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › Protamine_like | 0.89 | 73.0 | 6.33e-01 | 100.0% | 60.0% |
| 3893243 | 190.1.1.9 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_WDHD1 | 0.87 | 77.0 | 7.11e-01 | 100.0% | 80.0% |
| 3426642 | 375.1.1.96 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YABBY | 0.87 | 72.0 | 6.92e-01 | 97.7% | 80.0% |
| 3223068 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.83 | 71.0 | 6.37e-01 | 100.0% | 70.0% |
| 3715403 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.79 | 67.0 | 6.12e-01 | 100.0% | 71.7% |
| 3391169 | 103.4.1.25 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF27628 | 0.72 | 59.0 | 5.12e-01 | 95.3% | 67.1% |
| 3239423 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.71 | 58.0 | 5.81e-01 | 100.0% | 97.8% |
| 3993576 | 610.3.1.3 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 | 0.69 | 51.0 | 3.53e-01 | 88.4% | 22.4% |