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ubiquitin_domain-containing_protein

Euk-Vir

Pandoravirus_inopinatum

ubiquitin_domain-containing_protein__YP_009119676__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009119676 ↗
Protein ID:
ubiquitin_domain-containing_protein
Kingdom:
euk

Quality

70.2 mean pLDDT

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-170
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yhoE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.76 36.0 4.88e-01 92.7% 82.9%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 33.0 4.29e-01 96.0% 71.2%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 30.0 4.44e-01 99.2% 83.9%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 29.0 4.51e-01 99.2% 93.8%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 28.0 4.40e-01 99.2% 92.0%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.71 33.0 4.77e-01 73.4% 100.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 31.0 4.63e-01 99.2% 98.1%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 33.0 3.97e-01 100.0% 70.2%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 27.0 3.79e-01 100.0% 81.4%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 39.0 4.42e-01 100.0% 80.2%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.60 29.0 3.77e-01 99.2% 82.1%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 3.98e-01 100.0% 63.1%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.57 30.0 3.27e-01 71.8% 58.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 28.0 3.28e-01 100.0% 67.5%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 27.0 3.76e-01 100.0% 98.3%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.06e-01 100.0% 75.6%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.54 25.0 3.24e-01 100.0% 77.3%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 30.0 3.31e-01 99.2% 66.3%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4191690 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.76 29.0 4.16e-01 100.0% 74.1%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 30.0 3.62e-01 99.2% 54.1%
3299797 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.75 30.0 4.27e-01 100.0% 76.7%
3261395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 32.0 4.65e-01 75.0% 87.9%
3877485 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 33.0 3.93e-01 70.2% 62.4%
3854862 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 33.0 3.75e-01 71.0% 56.8%
4890270 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.71 28.0 4.14e-01 100.0% 83.3%
3485965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 31.0 4.42e-01 76.6% 88.3%
3617111 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 33.0 3.90e-01 71.0% 63.3%
3879064 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 33.0 3.78e-01 71.0% 61.1%
3907619 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 32.0 3.82e-01 71.0% 64.7%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 39.0 4.73e-01 100.0% 91.3%
3699652 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 32.0 4.38e-01 73.4% 90.8%
2126408 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.65 36.0 4.31e-01 87.1% 81.5%
3584224 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 31.0 3.34e-01 71.0% 51.4%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 31.0 4.35e-01 73.4% 100.0%
3474715 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 32.0 4.13e-01 88.7% 90.8%
4645538 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.62 29.0 3.73e-01 100.0% 74.7%
3469279 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 32.0 3.99e-01 80.6% 84.0%
3233461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 28.0 4.06e-01 99.2% 95.0%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 35.0 4.15e-01 100.0% 85.9%
4250193 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.57 32.0 3.76e-01 76.6% 76.7%
552 4.1.1.61 ↗ beta barrels › SH3 › SH3 › SH3 › KapB 0.57 30.0 3.27e-01 71.8% 58.7%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.57 30.0 3.52e-01 97.6% 71.8%
4281699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 28.0 3.60e-01 100.0% 80.0%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 35.0 4.11e-01 96.8% 90.6%
3214653 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 39.0 4.34e-01 100.0% 92.6%
4340758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 27.0 3.42e-01 100.0% 85.7%
3595833 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 32.0 3.56e-01 74.2% 77.9%
3807651 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.52 40.0 4.22e-01 83.9% 90.9%
3310575 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.52 40.0 4.29e-01 99.2% 95.2%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 35.0 2.95e-01 96.0% 39.6%
D2 high residues 176-252
PDB
Domain cluster: rep: IMGVR_UViG_3300021400_004370-3300021400-Ga0224422_126570053__D12-86
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF11976.15 best Rad60-SLD 36.6 4.30e-09 92.2% 100.0%
PF00240.30 ubiquitin 72.6 2.50e-20 89.6% 94.4%