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ubiquitin_domain-containing_protein

Euk-Vir

Pandoravirus_inopinatum

ubiquitin_domain-containing_protein__YP_009119887__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009119887 ↗
Protein ID:
ubiquitin_domain-containing_protein
Kingdom:
euk

Quality

64.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 176-246
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF11976.15 best Rad60-SLD 24.7 2.30e-05 100.0% 97.2%
PF00240.30 ubiquitin 46.6 3.20e-12 98.6% 94.4%
D2 medium residues 27-84
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.75 57.0 4.57e-01 81.0% 74.8%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.75 54.0 5.91e-01 94.8% 95.7%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 65.0 5.76e-01 98.3% 69.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 55.0 5.11e-01 98.3% 64.4%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 57.0 5.63e-01 98.3% 79.4%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 5.49e-01 98.3% 85.7%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.70 50.0 4.09e-01 98.3% 39.8%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 5.41e-01 94.8% 93.8%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.68 55.0 4.61e-01 89.7% 61.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 51.0 5.48e-01 100.0% 100.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.66 55.0 5.28e-01 98.3% 80.6%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.66 46.0 3.19e-01 74.1% 62.4%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 4.82e-01 98.3% 65.1%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 4.28e-01 89.7% 93.7%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 49.0 5.02e-01 98.3% 88.9%
4ybvA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 48.0 3.73e-01 79.3% 86.8%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.63 49.0 3.61e-01 87.9% 43.4%
3s4kA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 46.0 3.61e-01 79.3% 86.3%
5eo4A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 47.0 3.54e-01 81.0% 82.0%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 55.0 4.77e-01 100.0% 66.7%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 5.30e-01 100.0% 96.9%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 51.0 3.89e-01 98.3% 74.2%
1c8uA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 44.0 3.21e-01 75.9% 69.9%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.52e-01 98.3% 64.0%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.60 43.0 3.24e-01 75.9% 86.1%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.60 48.0 3.12e-01 87.9% 60.8%
3lbeB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 46.0 3.62e-01 82.8% 92.7%
3dkzA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 45.0 3.52e-01 81.0% 82.4%
2wxwA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.60 45.0 3.36e-01 82.8% 57.6%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.60 44.0 3.50e-01 81.0% 59.2%
2qqpA03 2.60.40.4260 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 45.0 3.53e-01 86.2% 73.7%
3gekA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 42.0 3.25e-01 75.9% 77.1%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.59 46.0 3.64e-01 89.7% 81.1%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 46.0 4.48e-01 87.9% 83.1%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.58 50.0 4.13e-01 98.3% 54.1%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.58 44.0 3.54e-01 86.2% 86.6%
3u0aA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.58 47.0 3.05e-01 89.7% 60.2%
1sbkA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 48.0 3.65e-01 93.1% 91.2%
1jrrA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 43.0 3.45e-01 82.8% 77.9%
7b3aA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 41.0 3.11e-01 77.6% 44.3%
2x0qA01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.57 40.0 3.17e-01 81.0% 33.1%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.57 44.0 3.49e-01 89.7% 85.2%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 45.0 2.89e-01 96.6% 39.9%
1a41A01 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.56 45.0 3.59e-01 91.4% 61.4%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.56 44.0 3.54e-01 94.8% 73.5%
3hduA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 45.0 3.40e-01 91.4% 90.8%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 47.0 3.57e-01 96.6% 93.7%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.54 40.0 3.67e-01 82.8% 95.1%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 42.0 2.69e-01 91.4% 50.1%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.54 42.0 2.78e-01 89.7% 92.1%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.54 43.0 3.43e-01 93.1% 62.0%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.53 45.0 3.75e-01 98.3% 82.2%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 43.0 4.05e-01 91.4% 83.1%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 40.0 3.57e-01 86.2% 85.7%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.51 38.0 3.18e-01 81.0% 46.7%
1uwyA02 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.51 39.0 3.39e-01 86.2% 78.4%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.57e-01 93.1% 24.7%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 36.0 2.64e-01 81.0% 71.6%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 43.0 2.84e-01 98.3% 92.9%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4426276 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 68.0 6.35e-01 94.8% 85.7%
3968432 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.78 60.0 4.88e-01 82.8% 79.0%
3784334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 55.0 5.46e-01 98.3% 76.7%
3786430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.80e-01 98.3% 92.0%
2321269 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.74 65.0 5.76e-01 98.3% 69.0%
3914746 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.73 58.0 5.47e-01 98.3% 71.4%
5025104 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.66e-01 98.3% 92.0%
3377696 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.72 55.0 3.73e-01 81.0% 36.0%
3996279 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.72 61.0 5.52e-01 98.3% 68.8%
3451171 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.63e-01 98.3% 80.0%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 59.0 5.20e-01 98.3% 62.4%
3930014 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.71 56.0 4.09e-01 86.2% 82.5%
3296140 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.71 63.0 3.72e-01 98.3% 17.1%
4974463 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.71 53.0 3.85e-01 81.0% 44.2%
3924377 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 56.0 5.76e-01 98.3% 92.7%
3231154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.40e-01 100.0% 68.8%
5023947 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.70 53.0 3.76e-01 81.0% 42.9%
5022491 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.70 61.0 5.38e-01 98.3% 74.1%
3342814 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 61.0 5.20e-01 98.3% 78.9%
3963760 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.70 61.0 4.61e-01 100.0% 49.0%
1759629 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.69 55.0 4.54e-01 98.3% 47.7%
3370374 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.69 61.0 4.62e-01 98.3% 56.3%
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.68 59.0 5.33e-01 98.3% 76.2%
3668420 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.68 59.0 4.14e-01 98.3% 41.1%
3709029 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 53.0 5.28e-01 98.3% 81.7%
3795384 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 53.0 3.61e-01 98.3% 23.3%
3801650 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.18e-01 100.0% 72.2%
3578208 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.63e-01 100.0% 94.5%
3387378 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 59.0 5.22e-01 98.3% 70.6%
3625264 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 52.0 4.48e-01 98.3% 52.6%
3540014 243.1.1.40 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 0.67 54.0 4.24e-01 91.4% 82.3%
3576940 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 52.0 3.52e-01 98.3% 22.2%
2389702 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.66 50.0 4.05e-01 82.8% 71.1%
3669214 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.66 59.0 4.54e-01 100.0% 91.5%
3300226 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.66 57.0 5.17e-01 98.3% 91.3%
3357239 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.66 57.0 4.25e-01 100.0% 81.0%
4078260 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.66 59.0 5.05e-01 98.3% 65.6%
4645538 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.66 58.0 5.29e-01 96.6% 76.0%
171891 4.1.1.110 beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.66 52.0 5.30e-01 100.0% 90.9%
4293453 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 53.0 4.84e-01 98.3% 66.3%
3333322 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 57.0 4.38e-01 98.3% 42.2%
3884661 4.1.1.382 beta barrels › SH3 › SH3 › SH3 › PF31078 0.65 57.0 4.61e-01 98.3% 77.3%
4995784 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 53.0 4.92e-01 98.3% 72.0%
3928711 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 54.0 4.81e-01 98.3% 64.7%
3964944 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.64 55.0 4.20e-01 100.0% 51.4%
3981575 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 49.0 5.07e-01 100.0% 90.9%
3473407 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 55.0 5.09e-01 98.3% 82.7%
4318415 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 52.0 4.46e-01 94.8% 84.2%
3708283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 55.0 4.87e-01 100.0% 83.5%
3808601 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.72e-01 98.3% 88.2%
3634047 222.1.1.15 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3C 0.62 47.0 3.40e-01 87.9% 79.5%
3925780 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.61 50.0 3.07e-01 91.4% 23.3%
3174977 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 48.0 4.14e-01 98.3% 54.7%
4013072 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 48.0 3.76e-01 100.0% 68.4%
3932484 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.90e-01 98.3% 92.2%
5043037 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.60 51.0 4.32e-01 98.3% 87.0%
5015593 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.59 48.0 3.78e-01 91.4% 42.5%
3166879 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 48.0 4.69e-01 96.6% 93.8%
3819740 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.59 50.0 4.36e-01 96.6% 88.9%
3295575 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.58 50.0 4.23e-01 98.3% 79.0%
5029975 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.58 50.0 4.24e-01 98.3% 83.0%
3948255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 51.0 3.94e-01 100.0% 48.5%
4951146 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.57 47.0 3.33e-01 96.6% 77.6%
3374363 222.1.1.3 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl_CoA_thio 0.57 41.0 2.96e-01 77.6% 90.0%
4065004 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.55 38.0 3.22e-01 74.1% 79.1%
3988584 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 42.0 3.56e-01 87.9% 54.0%
3194888 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.52 45.0 3.35e-01 100.0% 45.6%
3716329 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 39.0 2.95e-01 86.2% 83.0%
430591 222.1.1.3 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl_CoA_thio 0.52 37.0 2.90e-01 81.0% 75.3%
5063188 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.51 38.0 2.70e-01 84.5% 82.3%