ubiquitin_ligase

Euk-Vir

Cotia_virus_SPAn232

ubiquitin_ligase__YP_005296343__Cotia_virus_SPAn232__930275

Identity

75.2 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Oryzopoxvirus› Cotia_virus_SPAn232

TaxID: 930275

View cluster (11 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-130

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04383.20 best	KilA-N	57.1	2.10e-15	75.4%	78.5%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1bm8A00	3.10.260.10	Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain	0.69	51.0	5.40e-01	86.8%	87.9%
2ogqA01	3.30.1120.30	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain	0.63	38.0	3.71e-01	96.5%	53.2%
4nkbB02	3.30.1120.130	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain ›	0.57	29.0	3.24e-01	92.1%	58.9%
6grrB01	3.30.457.10	Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain	0.53	31.0	3.63e-01	85.1%	83.5%
3p24A01	2.40.128.470	Mainly Beta › Beta Barrel › Lipocalin ›	0.53	43.0	3.96e-01	90.4%	79.1%
2xvlA01	2.60.40.1760	Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31)	0.52	40.0	3.16e-01	80.7%	92.7%
2b5uA03	3.10.380.10	Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Colicin E3-like ribonuclease domain	0.51	31.0	3.35e-01	91.2%	69.4%
1yqfB00	3.10.280.10	Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein	0.50	39.0	3.37e-01	81.6%	67.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3785460	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.66	55.0	5.16e-01	89.5%	82.0%
3222419	331.23.1.0 ↗	a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain	0.63	29.0	3.56e-01	83.3%	66.7%
3248668	79.1.1.0 ↗	beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain	0.57	32.0	3.74e-01	89.5%	78.8%
4937746	3016.1.1.0 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases	0.53	43.0	4.29e-01	88.6%	86.1%

D2 medium residues 199-261

PDB

Domain cluster: rep: hypothetical_protein_KM622_gp073__YP_010086491__Spodoptera_exempta_nucleopolyhedrovirus__1242863__D109-178

Pfam (6)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13920.13 best	zf-C3HC4_3	33.0	6.00e-08	82.5%	89.8%
PF13639.13	zf-RING_2	43.8	3.50e-11	73.0%	95.5%
PF14634.13	zf-RING_5	32.7	8.10e-08	73.0%	97.7%
PF13923.13	zf-C3HC4_2	34.7	1.70e-08	69.8%	97.5%
PF00097.32	zf-C3HC4	36.9	3.70e-09	68.2%	100.0%
PF13445.13	zf-RING_UBOX	31.2	2.40e-07	65.1%	100.0%