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ubiquitin_specific_peptidase_C19
Euk-VirPhaeocystis_globosa_virus
ubiquitin_specific_peptidase_C19__YP_008052569__Phaeocystis_globosa_virus__251749
Identity
- Accession:
- YP_008052569 ↗
- Protein ID:
- ubiquitin_specific_peptidase_C19
- Kingdom:
- euk
Quality
73.5
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Prymnesiovirus›
Phaeocystis_globosa_virus
TaxID: 251749
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-130
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00443.36 best | UCH | 66.1 | 5.50e-18 | 92.1% | 42.5% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vjvA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.84 | 69.0 | 5.07e-01 | 85.7% | 37.3% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.83 | 70.0 | 5.10e-01 | 92.1% | 36.0% |
| 5chtB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.82 | 68.0 | 4.98e-01 | 91.3% | 36.3% |
| 2gfoA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.80 | 73.0 | 5.20e-01 | 96.0% | 40.4% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.80 | 69.0 | 4.94e-01 | 90.5% | 35.9% |
| 3i3tA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.77 | 68.0 | 4.99e-01 | 92.9% | 39.9% |
| 4msxA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.75 | 66.0 | 4.87e-01 | 92.9% | 39.4% |
| 2vhfB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.73 | 59.0 | 4.27e-01 | 88.9% | 32.0% |
| 3bqoA00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.57 | 43.0 | 3.69e-01 | 79.4% | 81.7% |
| 5nohA00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.56 | 36.0 | 3.89e-01 | 79.4% | 78.6% |
| 7bkeC01 | 1.10.1060.10 | Mainly Alpha › Orthogonal Bundle › Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 › Alpha-helical ferredoxin | 0.54 | 33.0 | 3.48e-01 | 89.7% | 67.3% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.52 | 32.0 | 3.75e-01 | 80.2% | 89.7% |
| 4zudA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 38.0 | 3.10e-01 | 77.8% | 99.6% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3614286 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.89 | 76.0 | 5.34e-01 | 96.0% | 32.9% |
| 3684619 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.83 | 71.0 | 4.88e-01 | 89.7% | 30.1% |
| 3814705 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.83 | 77.0 | 5.41e-01 | 98.4% | 35.1% |
| 7396 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.83 | 71.0 | 4.94e-01 | 89.7% | 32.2% |
| 3568385 | 219.1.1.112 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 | 0.83 | 69.0 | 5.02e-01 | 96.0% | 34.9% |
| 4824421 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.83 | 61.0 | 6.66e-01 | 86.5% | 91.3% |
| 3460558 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.82 | 75.0 | 5.51e-01 | 98.4% | 40.7% |
| 3362301 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.82 | 73.0 | 5.24e-01 | 99.2% | 35.9% |
| 3361220 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.82 | 73.0 | 5.09e-01 | 98.4% | 31.7% |
| 3276495 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.82 | 74.0 | 5.14e-01 | 95.2% | 32.6% |
| 3922974 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.82 | 72.0 | 5.03e-01 | 92.1% | 33.1% |
| 3532456 | 219.1.1.112 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 | 0.82 | 68.0 | 5.04e-01 | 90.5% | 37.9% |
| 2430609 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.82 | 69.0 | 7.18e-01 | 88.1% | 97.5% |
| 4029745 | 219.1.1.112 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 | 0.82 | 77.0 | 5.49e-01 | 100.0% | 37.6% |
| 3842107 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.81 | 70.0 | 4.98e-01 | 96.0% | 34.3% |
| 3799298 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.81 | 70.0 | 4.77e-01 | 93.7% | 27.7% |
| 3809821 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.81 | 73.0 | 5.22e-01 | 96.0% | 36.7% |
| 3832604 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.80 | 73.0 | 4.54e-01 | 96.0% | 20.3% |
| 3864688 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.80 | 73.0 | 5.13e-01 | 95.2% | 37.7% |
| 3750815 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.80 | 75.0 | 5.18e-01 | 99.2% | 32.9% |
| 4795720 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.80 | 63.0 | 5.17e-01 | 95.2% | 48.1% |
| 1844150 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.80 | 66.0 | 4.84e-01 | 91.3% | 35.4% |
| 4017540 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.79 | 71.0 | 5.14e-01 | 95.2% | 37.0% |
| 3794507 | 221.1.1.99 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UCH | 0.79 | 67.0 | 4.29e-01 | 92.9% | 20.9% |
| 3628143 | 221.1.1.99 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UCH | 0.79 | 66.0 | 3.99e-01 | 92.1% | 14.7% |
| 3785778 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.79 | 72.0 | 5.16e-01 | 96.8% | 38.1% |
| 3246511 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.77 | 70.0 | 5.00e-01 | 95.2% | 43.0% |
| 4265797 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.77 | 68.0 | 4.78e-01 | 93.7% | 32.1% |
| 3624308 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.77 | 67.0 | 4.84e-01 | 91.3% | 37.5% |
| 3920985 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.77 | 70.0 | 4.91e-01 | 96.8% | 38.1% |
| 3996369 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.58 | 43.0 | 3.18e-01 | 79.4% | 95.4% |
| 3563905 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.52 | 45.0 | 3.47e-01 | 96.0% | 94.4% |
D2
medium
residues 131-345
Domain cluster:
rep: hypothetical_protein_MPVG_00080__YP_007676148__Micromonas_pusilla_virus_12T__755272__D90-240
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00443.36 best | UCH | 100.9 | 1.30e-28 | 89.8% | 50.0% |
| PF13423.13 | UCH_1 | 32.1 | 1.40e-07 | 85.6% | 51.4% |