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uncharacterized_HNH_endonuclease
Euk-VirAcanthamoeba_polyphaga_mimivirus
uncharacterized_HNH_endonuclease__YP_003986743__Acanthamoeba_polyphaga_mimivirus__212035
Identity
- Accession:
- YP_003986743 ↗
- Protein ID:
- uncharacterized_HNH_endonuclease
- Kingdom:
- euk
Quality
70.6
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Mimivirus›
Acanthamoeba_polyphaga_mimivirus
TaxID: 212035
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-116
Domain cluster:
rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13392.13 best | HNH_3 | 42.3 | 6.10e-11 | 46.2% | 93.5% |
| PF07463.17 | NUMOD4 | 38.7 | 1.30e-09 | 41.3% | 93.9% |
D2
medium
residues 126-175
Domain cluster:
rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_10000072181__D164-213
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.89 | 80.0 | 7.09e-01 | 100.0% | 70.6% |
| 5yc9B01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.77 | 44.0 | 3.50e-01 | 70.0% | 28.9% |
| 3h5tA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.67 | 45.0 | 4.60e-01 | 70.0% | 93.6% |
| 1jceA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.65 | 42.0 | 2.98e-01 | 100.0% | 21.6% |
| 2xi8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 54.0 | 4.88e-01 | 98.0% | 83.3% |
| 3tqnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 46.0 | 4.11e-01 | 96.0% | 67.1% |
| 1wgyA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 39.0 | 3.54e-01 | 88.0% | 97.4% |
| 3kd9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 43.0 | 3.05e-01 | 98.0% | 70.1% |
| 2ljxA00 | 3.30.240.40 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein | 0.51 | 38.0 | 3.33e-01 | 86.0% | 67.1% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2876 | 101.1.14.2 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like | 0.89 | 80.0 | 7.05e-01 | 100.0% | 69.6% |
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.86 | 76.0 | 6.81e-01 | 100.0% | 71.0% |
| 3171408 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.85 | 73.0 | 7.38e-01 | 98.0% | 96.0% |
| 3587703 | 101.1.14.0 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases | 0.83 | 71.0 | 7.19e-01 | 100.0% | 94.0% |
| 4384880 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.82 | 73.0 | 6.08e-01 | 100.0% | 58.8% |
| 3987930 | 101.1.4.2 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI | 0.69 | 47.0 | 4.23e-01 | 72.0% | 68.6% |
| 4343338 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.65 | 43.0 | 2.65e-01 | 70.0% | 18.7% |
| 3227545 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.64 | 44.0 | 4.17e-01 | 70.0% | 91.7% |
| 3720958 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.62 | 49.0 | 4.98e-01 | 86.0% | 96.0% |
| 3691772 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.61 | 48.0 | 4.69e-01 | 86.0% | 87.3% |
| 3636417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.60 | 45.0 | 4.44e-01 | 82.0% | 98.1% |
| 4491522 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.58 | 44.0 | 4.17e-01 | 84.0% | 83.3% |
| 4468802 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.58 | 47.0 | 4.03e-01 | 90.0% | 94.9% |
| 3787164 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 47.0 | 2.94e-01 | 100.0% | 42.3% |
| 3704805 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.53 | 41.0 | 4.27e-01 | 92.0% | 91.1% |
| 3997867 | 2484.1.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N | 0.52 | 45.0 | 2.96e-01 | 100.0% | 44.2% |
| 3197527 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.51 | 42.0 | 2.58e-01 | 94.0% | 29.4% |
D3
medium
residues 190-310
Domain cluster:
rep: OP056089.1__UYD72102.1__X__00002__D5-102