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uncharacterized_WD_repeat-containing_protein

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

uncharacterized_WD_repeat-containing_protein__YP_003986762__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003986762 ↗
Protein ID:
uncharacterized_WD_repeat-containing_protein
Kingdom:
euk

Quality

38.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 802-813_825-966
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.79 51.0 4.09e-01 98.7% 35.8%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.71 52.0 3.82e-01 100.0% 30.1%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.68 52.0 3.98e-01 100.0% 36.4%
2yfsA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 57.0 3.98e-01 99.4% 39.9%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 44.0 3.62e-01 79.2% 87.9%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 53.0 3.87e-01 98.7% 51.8%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 51.0 3.86e-01 100.0% 55.2%
3fn9C04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 25.0 3.10e-01 70.1% 67.4%
3uoaB02 2.60.40.3360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 29.0 3.08e-01 76.6% 55.1%
8f5pC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 3.58e-01 98.7% 45.1%
1kqrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 4.12e-01 98.7% 78.8%
3vmnA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 30.0 3.45e-01 70.8% 75.7%
1e50B00 2.40.250.10 Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit 0.52 31.0 3.43e-01 84.4% 70.8%
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 44.0 3.57e-01 94.8% 87.3%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052931 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.89 65.0 4.61e-01 100.0% 28.9%
5053463 5.1.5.231 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › SBBP 0.88 65.0 5.13e-01 100.0% 40.7%
5052460 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.88 66.0 4.82e-01 100.0% 32.6%
5079413 5.1.3.272 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SBBP 0.87 65.0 5.25e-01 100.0% 44.2%
5047051 5.1.4.663 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBBP 0.87 65.0 4.71e-01 100.0% 31.6%
5033551 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.85 62.0 4.49e-01 100.0% 29.9%
5052006 5.1.4.663 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBBP 0.85 62.0 4.35e-01 100.0% 26.7%
4955432 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.84 62.0 4.39e-01 100.0% 27.6%
5012323 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.84 65.0 4.67e-01 100.0% 31.7%
4951148 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.83 60.0 4.46e-01 100.0% 31.7%
3229434 5.1.3.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.80 51.0 3.95e-01 98.7% 31.9%
5004119 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.80 63.0 4.55e-01 100.0% 31.9%
4868007 5.1.2.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › NHL 0.78 50.0 4.15e-01 98.7% 39.0%
3618164 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.78 52.0 3.36e-01 99.4% 16.2%
4978599 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.77 57.0 4.22e-01 100.0% 31.8%
4456473 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.77 67.0 4.62e-01 100.0% 30.4%
5046596 5.1.4.663 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBBP 0.76 70.0 4.85e-01 100.0% 32.9%
3714021 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.70 53.0 3.84e-01 100.0% 29.4%
3579989 5.1.4.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.70 48.0 3.64e-01 100.0% 30.0%
3715923 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.68 55.0 3.92e-01 100.0% 30.7%
5016360 5.1.5.231 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › SBBP 0.66 62.0 4.53e-01 100.0% 41.6%
5081947 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 57.0 4.40e-01 100.0% 43.3%
3719842 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.61 54.0 4.27e-01 99.4% 49.2%
3699156 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.57 52.0 3.78e-01 100.0% 38.4%
4002544 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.54 50.0 3.36e-01 99.4% 35.0%
4884657 10.1.1.6 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › VP4_haemagglut 0.54 41.0 4.06e-01 98.1% 74.1%
3399544 5.1.3.25 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.53 47.0 3.73e-01 100.0% 48.7%
1877624 5.1.4.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.53 49.0 3.40e-01 100.0% 43.4%
5060183 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 24.0 3.12e-01 70.8% 75.3%
3938746 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 46.0 3.49e-01 98.7% 71.8%
2321152 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 44.0 3.47e-01 99.4% 50.3%
D2 medium residues 967-1051_1077-1099
PDB
D3 medium residues 1125-1294
PDB
D4 medium residues 1295-1389
PDB