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uncovered_polypeptide_polyprotein_P2ab
Euk-VirSowbane_mosaic_virus
uncovered_polypeptide_polyprotein_P2ab__YP_002158813_394-928__Sowbane_mosaic_virus__378833
Identity
- Accession:
- YP_002158813_394-928 ↗
- Protein ID:
- uncovered_polypeptide_polyprotein_P2ab
- Kingdom:
- euk
Quality
87.2
mean pLDDT
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-54_73-102
D2
medium
residues 55-72_260-298_414-483
D3
medium
residues 103-125_214-259_299-331
Domain cluster:
rep: uncovered_polypeptide_polyprotein_P2ab__YP_007438849_416-981__Lucerne_transient_streak_virus__12470__D122-154_255-281_340-353
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 47.2 | 2.40e-12 | 66.7% | 13.6% |
D4
medium
residues 364-413
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 64.0 | 1.80e-17 | 100.0% | 12.9% |
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1konA03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.74 | 58.0 | 5.23e-01 | 92.0% | 68.0% |
| 3fryA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 60.0 | 5.59e-01 | 100.0% | 82.8% |
| 2id1A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.68 | 57.0 | 4.64e-01 | 100.0% | 74.0% |
| 1s5jA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.67 | 53.0 | 3.97e-01 | 100.0% | 36.3% |
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.67 | 54.0 | 4.27e-01 | 100.0% | 48.4% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 56.0 | 4.90e-01 | 100.0% | 76.8% |
| 2cjkA02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 54.0 | 4.77e-01 | 100.0% | 81.5% |
| 3v8vA01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.65 | 54.0 | 3.66e-01 | 100.0% | 23.6% |
| 3tufA00 | 1.10.287.4300 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like | 0.65 | 56.0 | 4.37e-01 | 100.0% | 54.8% |
| 1in0A01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 51.0 | 4.73e-01 | 98.0% | 81.4% |
| 1wg4A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.64 | 52.0 | 4.66e-01 | 100.0% | 83.1% |
| 1whyA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 51.0 | 4.68e-01 | 100.0% | 88.9% |
| 1mw7A03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.62 | 50.0 | 4.56e-01 | 100.0% | 73.3% |
| 1jh6A00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.60 | 45.0 | 3.22e-01 | 90.0% | 68.0% |
| 2v4jB01 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 50.0 | 3.77e-01 | 98.0% | 46.2% |
| 6e4nA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 45.0 | 4.23e-01 | 96.0% | 84.5% |
| 4oloB00 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.59 | 44.0 | 3.96e-01 | 92.0% | 56.0% |
| 2qsrA01 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.58 | 44.0 | 3.21e-01 | 86.0% | 60.0% |
| 4ls9B02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.58 | 41.0 | 3.22e-01 | 86.0% | 32.5% |
| 8c01r02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.58 | 42.0 | 3.26e-01 | 78.0% | 84.5% |
| 3n5mB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 42.0 | 3.17e-01 | 100.0% | 36.9% |
| 1uu1B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 45.0 | 3.41e-01 | 94.0% | 57.3% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 3.13e-01 | 92.0% | 67.1% |
| 2x49A02 | 3.40.5.40 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › FHIPEP family, domain 2 | 0.52 | 39.0 | 3.96e-01 | 90.0% | 89.6% |
| 5trdA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.32e-01 | 88.0% | 50.0% |
| 2qvoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.30e-01 | 92.0% | 49.4% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 38.0 | 3.29e-01 | 98.0% | 50.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4109303 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.73 | 59.0 | 5.21e-01 | 92.0% | 69.3% |
| 4622891 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.72 | 59.0 | 5.24e-01 | 94.0% | 68.0% |
| 4441866 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.71 | 58.0 | 5.38e-01 | 94.0% | 78.5% |
| 4231349 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.70 | 55.0 | 5.10e-01 | 94.0% | 72.9% |
| 5061913 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.70 | 59.0 | 4.87e-01 | 100.0% | 74.7% |
| 4296471 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.68 | 54.0 | 4.96e-01 | 94.0% | 72.9% |
| 4938386 | 304.120.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st | 0.68 | 57.0 | 5.49e-01 | 100.0% | 85.0% |
| 4989002 | 304.120.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st | 0.68 | 57.0 | 5.46e-01 | 100.0% | 85.0% |
| 3972094 | 304.120.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st | 0.68 | 56.0 | 5.41e-01 | 100.0% | 83.3% |
| 4115093 | 304.120.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st | 0.68 | 57.0 | 5.47e-01 | 100.0% | 83.3% |
| 4988867 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.68 | 53.0 | 5.04e-01 | 94.0% | 80.0% |
| 4956226 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.67 | 55.0 | 4.98e-01 | 100.0% | 76.0% |
| 4070496 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.67 | 51.0 | 4.68e-01 | 92.0% | 66.7% |
| 4507546 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.67 | 52.0 | 4.85e-01 | 94.0% | 72.9% |
| 4886247 | 4143.1.1.10 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › RlmL_1st | 0.67 | 56.0 | 5.34e-01 | 100.0% | 83.3% |
| 4971836 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.67 | 57.0 | 4.49e-01 | 100.0% | 49.1% |
| 5033558 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.66 | 54.0 | 5.02e-01 | 100.0% | 80.0% |
| 4049038 | 304.120.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st | 0.66 | 54.0 | 5.21e-01 | 100.0% | 83.3% |
| 2074659 | 304.120.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st | 0.65 | 53.0 | 5.11e-01 | 100.0% | 85.2% |
| 4078225 | 304.120.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st | 0.65 | 54.0 | 5.17e-01 | 100.0% | 83.3% |
| 4604805 | 304.117.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC | 0.65 | 51.0 | 4.86e-01 | 98.0% | 81.5% |
| 4997804 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.64 | 51.0 | 4.84e-01 | 98.0% | 86.2% |
| 3786964 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.63 | 50.0 | 3.60e-01 | 100.0% | 47.6% |
| 4990073 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 49.0 | 4.46e-01 | 90.0% | 74.3% |
| 4604387 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.63 | 50.0 | 4.54e-01 | 98.0% | 76.0% |
| 4051474 | 387.1.5.3 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Toxin_3 | 0.62 | 52.0 | 4.55e-01 | 100.0% | 62.7% |
| 3857454 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.61 | 49.0 | 2.91e-01 | 100.0% | 12.3% |
| 4058379 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.61 | 49.0 | 4.65e-01 | 98.0% | 81.5% |
| 4280715 | 387.1.5.3 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Toxin_3 | 0.60 | 45.0 | 4.43e-01 | 98.0% | 76.4% |
| 4563340 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.59 | 43.0 | 4.04e-01 | 86.0% | 65.7% |
| 4932614 | 304.24.1.6 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SBDS_C | 0.59 | 45.0 | 4.20e-01 | 92.0% | 80.0% |
| 4928456 | 306.6.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like | 0.59 | 44.0 | 4.22e-01 | 90.0% | 84.6% |
| 3740276 | 7577.1.1.2 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 | 0.56 | 45.0 | 2.72e-01 | 90.0% | 37.6% |
| 4996337 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 42.0 | 4.09e-01 | 92.0% | 76.7% |
| 4968601 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 41.0 | 3.20e-01 | 88.0% | 37.1% |
| 4975021 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.55 | 43.0 | 3.82e-01 | 100.0% | 79.5% |
| 5070326 | 327.11.1.7 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_NusA_2nd | 0.55 | 40.0 | 3.99e-01 | 88.0% | 90.9% |
| 3284190 | 7577.1.1.2 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 | 0.54 | 45.0 | 2.66e-01 | 92.0% | 46.3% |
| 3282777 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 42.0 | 3.65e-01 | 98.0% | 83.3% |
| 4833001 | 101.1.2.47 ↗ | alpha arrays › HTH › HTH › winged helix domain › S10_plectin | 0.50 | 40.0 | 4.00e-01 | 100.0% | 94.5% |