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uncovered_polypeptide_polyprotein_P2ab
Euk-VirRyegrass_mottle_virus
uncovered_polypeptide_polyprotein_P2ab__YP_007438853_0-313__Ryegrass_mottle_virus__119910
Identity
- Accession:
- YP_007438853_0-313 ↗
- Protein ID:
- uncovered_polypeptide_polyprotein_P2ab
- Kingdom:
- euk
Quality
85.3
mean pLDDT
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 116-133_230-313
Domain cluster:
rep: ORF1a__YP_009047079__Human_astrovirus_BF34__1518575__D522-618
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zyoA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.92 | 82.0 | 8.33e-01 | 93.1% | 100.0% |
| 1mbmA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.88 | 56.0 | 6.68e-01 | 78.4% | 93.1% |
| 1p3cA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.84 | 73.0 | 7.29e-01 | 92.2% | 100.0% |
| 1wczA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.84 | 77.0 | 7.40e-01 | 98.0% | 92.2% |
| 2as9B01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.81 | 71.0 | 7.14e-01 | 93.1% | 92.1% |
| 2rdlA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.81 | 71.0 | 6.69e-01 | 92.2% | 100.0% |
| 1a7sA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.80 | 70.0 | 6.78e-01 | 92.2% | 100.0% |
| 5fahA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.80 | 71.0 | 6.74e-01 | 94.1% | 100.0% |
| 1eq9A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.80 | 69.0 | 6.59e-01 | 92.2% | 100.0% |
| 3s9cA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.79 | 68.0 | 6.45e-01 | 92.2% | 100.0% |
| 5hmaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.78 | 61.0 | 6.10e-01 | 82.4% | 94.2% |
| 1hpgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.78 | 61.0 | 6.18e-01 | 81.4% | 96.0% |
| 4ri0A01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.78 | 65.0 | 5.11e-01 | 88.2% | 91.4% |
| 2ijd101 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.74 | 60.0 | 4.93e-01 | 85.3% | 96.1% |
| 2hrvA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.72 | 57.0 | 5.88e-01 | 82.4% | 96.8% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.72 | 54.0 | 4.75e-01 | 78.4% | 92.5% |
| 1wv4B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.71 | 54.0 | 4.73e-01 | 80.4% | 87.7% |
| 4fvdA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.71 | 55.0 | 5.76e-01 | 82.4% | 98.9% |
| 2imlA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.70 | 52.0 | 5.06e-01 | 78.4% | 92.0% |
| 2wv9A01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.69 | 55.0 | 4.64e-01 | 86.3% | 90.1% |
| 1a5iA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 48.0 | 4.60e-01 | 74.5% | 82.2% |
| 2l1tA00 | 2.30.110.70 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.66 | 49.0 | 4.86e-01 | 78.4% | 85.3% |
| 3u28C00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.64 | 40.0 | 4.23e-01 | 83.3% | 70.7% |
| 6j0qA02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.59 | 41.0 | 4.03e-01 | 71.6% | 89.9% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 32.0 | 3.85e-01 | 80.4% | 82.8% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.56 | 33.0 | 3.88e-01 | 75.5% | 86.6% |
| 3fbqA01 | 2.60.40.1630 | Mainly Beta › Sandwich › Immunoglobulin-like › bacillus anthracis domain | 0.50 | 37.0 | 3.29e-01 | 78.4% | 54.2% |
| 2vobB02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.50 | 43.0 | 3.41e-01 | 95.1% | 69.2% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2472950 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.91 | 82.0 | 6.48e-01 | 93.1% | 100.0% |
| 2710030 | 1.1.5.12 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S39 | 0.89 | 83.0 | 6.51e-01 | 97.1% | 99.0% |
| 2526961 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.86 | 81.0 | 6.13e-01 | 100.0% | 94.6% |
| None | — | 0.86 | 80.0 | 6.10e-01 | 99.0% | 95.9% | |
| 1096110 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.86 | 79.0 | 6.04e-01 | 98.0% | 95.8% |
| None | — | 0.86 | 79.0 | 6.06e-01 | 98.0% | 95.8% | |
| 5051302 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.86 | 81.0 | 6.06e-01 | 100.0% | 97.3% |
| None | — | 0.85 | 78.0 | 5.99e-01 | 98.0% | 95.8% | |
| 3415399 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.85 | 70.0 | 5.36e-01 | 87.3% | 87.9% |
| 4387060 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.84 | 76.0 | 5.83e-01 | 96.1% | 93.5% |
| None | — | 0.84 | 76.0 | 5.88e-01 | 96.1% | 95.7% | |
| 4031177 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.84 | 74.0 | 5.70e-01 | 94.1% | 93.0% |
| 4247805 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.84 | 74.0 | 5.71e-01 | 94.1% | 93.4% |
| 4254177 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.83 | 74.0 | 5.12e-01 | 96.1% | 76.2% |
| 4028467 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.82 | 67.0 | 4.77e-01 | 85.3% | 72.4% |
| 3969197 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.82 | 75.0 | 5.39e-01 | 97.1% | 96.6% |
| 4974463 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.82 | 63.0 | 5.31e-01 | 82.4% | 50.3% |
| 3403377 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.82 | 72.0 | 5.27e-01 | 93.1% | 90.4% |
| 5018347 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.81 | 61.0 | 5.20e-01 | 78.4% | 51.6% |
| 3280223 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.80 | 66.0 | 5.21e-01 | 86.3% | 52.3% |
| 3601993 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.80 | 67.0 | 5.30e-01 | 88.2% | 93.3% |
| 3950458 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.79 | 64.0 | 5.21e-01 | 85.3% | 54.4% |
| 3216440 | 1.1.17.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 | 0.78 | 69.0 | 5.00e-01 | 94.1% | 88.5% |
| 2512790 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.78 | 70.0 | 5.19e-01 | 96.1% | 93.8% |
| 3464880 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.78 | 66.0 | 5.13e-01 | 91.2% | 94.9% |
| 5063188 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.78 | 65.0 | 4.98e-01 | 88.2% | 88.4% |
| 3244773 | 1.1.5.49 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 | 0.78 | 69.0 | 5.06e-01 | 96.1% | 89.6% |
| 3229867 | 1.1.17.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 | 0.77 | 66.0 | 4.87e-01 | 92.2% | 88.0% |
| 3278337 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.77 | 63.0 | 5.02e-01 | 86.3% | 55.9% |
| 22055 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.77 | 65.0 | 5.19e-01 | 89.2% | 55.0% |
| 5039871 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.77 | 62.0 | 4.52e-01 | 85.3% | 44.6% |
| 3504380 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.77 | 64.0 | 5.55e-01 | 89.2% | 95.5% |
| 3390982 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.77 | 70.0 | 5.21e-01 | 97.1% | 97.4% |
| 3611892 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.77 | 67.0 | 5.40e-01 | 94.1% | 100.0% |
| 4614564 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.76 | 64.0 | 5.10e-01 | 90.2% | 53.3% |
| 3277840 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.76 | 61.0 | 4.83e-01 | 86.3% | 55.9% |
| 2137682 | 1.1.5.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZNR | 0.73 | 54.0 | 5.47e-01 | 77.5% | 92.2% |
| 5075917 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.72 | 54.0 | 4.73e-01 | 78.4% | 88.7% |
| 3222818 | 1.1.17.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 | 0.72 | 63.0 | 4.63e-01 | 94.1% | 89.4% |
| 4976152 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.72 | 54.0 | 4.65e-01 | 78.4% | 81.9% |
| 2779726 | 1.1.17.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 | 0.72 | 63.0 | 5.08e-01 | 94.1% | 99.5% |
| 4118093 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.72 | 54.0 | 4.68e-01 | 79.4% | 89.0% |
| 3447771 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.70 | 58.0 | 4.37e-01 | 88.2% | 91.7% |
| 3433009 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.70 | 64.0 | 4.71e-01 | 99.0% | 84.3% |
| 4953386 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.70 | 52.0 | 4.70e-01 | 78.4% | 92.9% |
| 3377696 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.69 | 58.0 | 4.59e-01 | 89.2% | 96.0% |
| 140315 | 1.1.5.40 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN1 | 0.66 | 49.0 | 4.86e-01 | 78.4% | 85.3% |
| 3963092 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.66 | 47.0 | 4.87e-01 | 74.5% | 85.3% |
| 4930890 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 43.0 | 4.97e-01 | 73.5% | 96.0% |
| 3615787 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.61 | 55.0 | 4.25e-01 | 100.0% | 89.3% |
| 3062826 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.59 | 44.0 | 3.44e-01 | 79.4% | 92.7% |
| 3587906 | 4.1.1.46 ↗ | beta barrels › SH3 › SH3 › SH3 › VEG | 0.53 | 34.0 | 3.82e-01 | 78.4% | 85.0% |
| 3392421 | 11.1.1.260 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG_2 | 0.51 | 39.0 | 3.80e-01 | 80.4% | 78.2% |
| 3247874 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 34.0 | 3.65e-01 | 81.4% | 83.5% |
| 5018860 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.50 | 43.0 | 3.86e-01 | 96.1% | 80.7% |
D2
medium
residues 134-229