←Back to structures
uncovered_polypeptide_polyprotein_P2ab
Euk-VirRyegrass_mottle_virus
uncovered_polypeptide_polyprotein_P2ab__YP_007438853_393-946__Ryegrass_mottle_virus__119910
Identity
- Accession:
- YP_007438853_393-946 ↗
- Protein ID:
- uncovered_polypeptide_polyprotein_P2ab
- Kingdom:
- euk
Quality
86.1
mean pLDDT
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 11-79_156-228
Domain cluster:
rep: replicase_polyprotein__YP_009465710__Pepper_enamovirus__2073163__D698-776_892-917
D2
medium
residues 80-155_229-267_298-377
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 81.2 | 1.10e-22 | 41.5% | 21.1% |
| PF02123.22 | RdRP_4 | 31.6 | 1.20e-07 | 25.6% | 9.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 217141 | 304.48.1.15 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 | 0.77 | 73.0 | 5.83e-01 | 100.0% | 72.0% |
| 3273928 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.73 | 68.0 | 4.81e-01 | 100.0% | 59.5% |
| 3927049 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.72 | 67.0 | 5.21e-01 | 100.0% | 78.8% |
| 3920615 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.72 | 67.0 | 5.02e-01 | 100.0% | 74.1% |
| 3939319 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.70 | 63.0 | 4.96e-01 | 95.9% | 84.8% |
| 3645993 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.66 | 62.0 | 4.89e-01 | 100.0% | 71.9% |
| 3655168 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.66 | 62.0 | 4.82e-01 | 100.0% | 68.8% |
| 3676014 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.66 | 62.0 | 4.32e-01 | 99.5% | 54.6% |
| 4424453 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.65 | 61.0 | 4.34e-01 | 100.0% | 59.8% |
| 3911488 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.59 | 47.0 | 4.12e-01 | 100.0% | 58.2% |
| 3650065 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.55 | 38.0 | 3.46e-01 | 72.3% | 52.7% |
| 3681837 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.55 | 46.0 | 4.64e-01 | 88.2% | 96.9% |
| 3470124 | 3226.1.1.3 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › HCO3_cotransp | 0.50 | 37.0 | 2.79e-01 | 75.9% | 93.3% |
D3
medium
residues 448-488