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uncovered_polypeptide_polyprotein

Euk-Vir

Newbury_agent_1

uncovered_polypeptide_polyprotein__YP_529550_615-1154__Newbury_agent_1__331642

Identity

Accession:: YP_529550_615-1154 ↗
Protein ID:: uncovered_polypeptide_polyprotein
Kingdom:: euk

Quality

53.0 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Caliciviridae› Nebovirus› Newbury_agent_1

TaxID: 331642

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 152-233

PDB

D2 high residues 396-536

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03510.21 best	Peptidase_C24	102.4	2.50e-29	70.2%	99.1%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1wxrA01	2.40.10.120	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.78	66.0	5.26e-01	87.9%	72.8%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3439936	1.1.17.3 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2	0.82	69.0	5.35e-01	87.9%	75.8%
5037776	1.1.17.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2	0.80	67.0	5.69e-01	88.7%	85.0%
1096110	1.1.17.3 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2	0.78	66.0	5.61e-01	88.7%	76.4%
4485576	1.1.17.4 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64	0.78	65.0	5.06e-01	88.7%	84.1%
None	—		0.77	66.0	5.61e-01	88.7%	77.5%
None	—		0.77	65.0	5.55e-01	88.7%	76.7%
3907134	1.1.17.1 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin	0.74	62.0	5.29e-01	88.7%	80.5%
22087	1.1.5.1 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin	0.73	62.0	5.05e-01	88.7%	69.0%
4881914	1.1.5.33 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2	0.73	62.0	5.40e-01	88.7%	85.6%
4499041	1.1.5.57 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31	0.72	55.0	4.83e-01	79.4%	79.0%
4501706	1.4.1.0 ↗	beta barrels › cradle loop barrel › N-terminal domain of poxin › N-terminal domain of poxin	0.71	57.0	5.71e-01	89.4%	82.1%
4059005	1.1.17.23 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S7	0.71	55.0	4.47e-01	81.6%	93.8%
3883172	1.1.5.33 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2	0.69	38.0	4.65e-01	87.9%	82.1%
3248403	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.60	47.0	4.81e-01	87.9%	85.2%

D3 medium residues 34-133

PDB

D4 medium residues 324-395

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF20915.3 best	VPg	85.9	1.90e-24	66.7%	78.7%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2mxdA00	1.10.260.110	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) ›	0.84	56.0	5.98e-01	72.2%	79.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3228502	5001.1.1.27 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Sre	0.53	45.0	3.00e-01	95.8%	67.9%
3727979	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	41.0	2.96e-01	88.9%	31.8%