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uncovered_polypeptide_replicase

Euk-Vir

Citrus_leprosis_virus_C

uncovered_polypeptide_replicase__YP_654538_1805-2017__Citrus_leprosis_virus_C__347219

Identity

Protein ID:
uncovered_polypeptide_replicase
Kingdom:
euk

Quality

60.8 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Kitaviridae› Cilevirus› Citrus_leprosis_virus_C

TaxID: 347219

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pjaA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 51.0 3.32e-01 98.1% 65.7%
1c4oA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 50.0 3.65e-01 100.0% 32.6%
4q3kB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 50.0 3.35e-01 100.0% 50.8%
4ab5B01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 41.0 3.25e-01 73.1% 32.2%
6ecpB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.59 49.0 3.70e-01 100.0% 66.2%
3fvwB00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.59 49.0 3.46e-01 98.1% 74.2%
4wutA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 47.0 3.65e-01 98.1% 57.2%
6gs8A01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.58 45.0 2.95e-01 98.1% 17.4%
1ovnB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 38.0 3.03e-01 71.2% 32.5%
3bxpB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 45.0 3.04e-01 100.0% 36.6%
1grxA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 38.0 3.32e-01 71.2% 43.5%
7drdG01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.57 45.0 3.00e-01 98.1% 35.1%
4rsmD01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 47.0 3.39e-01 98.1% 46.0%
6g62A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 38.0 3.08e-01 73.1% 34.8%
2akoA00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.56 44.0 2.99e-01 98.1% 48.1%
4ombA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 36.0 2.72e-01 71.2% 22.7%
2k8sA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 37.0 3.32e-01 73.1% 45.0%
3kjxA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 43.0 3.43e-01 98.1% 57.1%
3ehdA00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 44.0 3.33e-01 98.1% 56.7%
4h2dA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.55 44.0 3.24e-01 94.2% 43.0%
1p77A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.55 44.0 3.32e-01 98.1% 61.7%
4ovjA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 36.0 2.63e-01 71.2% 20.4%
3lftA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 43.0 3.31e-01 98.1% 70.5%
1s3aA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 37.0 3.24e-01 71.2% 48.2%
2uvgA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 36.0 2.63e-01 71.2% 21.5%
3szpB02 3.40.190.290 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.54 36.0 2.50e-01 71.2% 18.1%
5ab4A00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 44.0 2.71e-01 100.0% 88.5%
3r5xA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 43.0 3.85e-01 98.1% 88.2%
2hraA01 3.40.30.70 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.53 41.0 3.57e-01 90.4% 85.4%
5z6bA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 35.0 2.59e-01 71.2% 21.0%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 35.0 3.05e-01 75.0% 37.8%
2d5cA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.53 42.0 3.47e-01 98.1% 81.4%
6bmaA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 40.0 2.71e-01 94.2% 30.1%
4r9fA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 41.0 2.88e-01 98.1% 39.3%
2lrcA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 34.0 2.89e-01 73.1% 36.1%
1hyuA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 34.0 2.93e-01 71.2% 40.0%
1k92A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 40.0 3.02e-01 98.1% 67.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951087 2007.3.1.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 0.63 52.0 3.86e-01 98.1% 33.5%
4389445 2002.3.1.6 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › YdjC 0.61 47.0 3.07e-01 98.1% 18.1%
4981134 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.61 50.0 4.61e-01 98.1% 71.4%
4947087 2007.3.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains 0.60 49.0 3.65e-01 98.1% 33.5%
3662109 605.1.1.275 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GRAS 0.60 48.0 3.80e-01 94.2% 99.2%
5073360 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.60 49.0 4.52e-01 98.1% 71.4%
3292976 7512.1.1.66 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Exostosin_GT47 0.59 50.0 3.04e-01 100.0% 35.5%
3826951 7512.1.1.10 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 0.58 44.0 3.10e-01 92.3% 24.3%
2519443 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 45.0 2.95e-01 98.1% 17.3%
3957132 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.58 48.0 3.87e-01 98.1% 46.4%
5010461 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.57 46.0 4.23e-01 98.1% 72.0%
4246555 2004.1.1.138 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta 0.57 46.0 3.50e-01 96.2% 60.0%
4975427 2007.15.1.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyrib_tr 0.57 41.0 3.18e-01 94.2% 32.3%
3237987 2007.1.3.28 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Glyco_transf_61 0.57 47.0 3.13e-01 98.1% 40.9%
5083808 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.56 46.0 4.25e-01 100.0% 71.4%
3907140 9002.1.1.2 ↗ a/b three-layered sandwiches › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 › PPIP5K2_N 0.56 38.0 3.81e-01 73.1% 69.1%
4991552 2007.1.14.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.56 45.0 3.58e-01 98.1% 60.8%
5001624 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.56 44.0 4.07e-01 98.1% 73.3%
4411724 2007.1.6.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › Shikimate_dh_N 0.56 44.0 3.77e-01 98.1% 92.0%
5007582 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.55 45.0 4.36e-01 98.1% 83.3%
3967339 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.55 36.0 3.03e-01 78.8% 36.8%
3658992 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.55 42.0 3.60e-01 88.5% 76.8%
4433034 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.55 46.0 3.96e-01 100.0% 74.4%
4453176 7514.1.1.1 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.55 43.0 3.24e-01 98.1% 36.2%
3973512 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.55 36.0 3.06e-01 73.1% 36.0%
4950695 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.55 43.0 3.99e-01 98.1% 72.0%
5056982 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 37.0 3.02e-01 73.1% 34.5%
4640339 2005.1.1.13 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.54 42.0 3.01e-01 96.2% 75.5%
4960067 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.54 36.0 2.87e-01 73.1% 30.0%
144729 2007.1.6.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › Shikimate_dh_N 0.54 42.0 3.62e-01 98.1% 91.0%
5083812 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.53 35.0 3.06e-01 71.2% 38.9%
4969199 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 42.0 3.44e-01 98.1% 42.9%
None — 0.53 40.0 2.98e-01 92.3% 31.2%
4008176 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.53 41.0 2.78e-01 98.1% 60.0%
5011716 2485.1.1.34 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rdx 0.53 35.0 3.24e-01 71.2% 49.3%
3592016 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 40.0 2.85e-01 88.5% 25.6%
4534173 2007.2.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like 0.51 42.0 3.44e-01 92.3% 62.2%
3791564 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 40.0 3.15e-01 98.1% 48.6%
3957666 2007.1.14.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › CbiX 0.50 42.0 3.87e-01 98.1% 72.9%
D2 high residues 83-178
PDB