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unknown_similar_to_AMEV042

Euk-Vir

Choristoneura_biennis_entomopoxvirus

unknown_similar_to_AMEV042__YP_008004151__Choristoneura_biennis_entomopoxvirus__10288

Identity

Accession:
YP_008004151 ↗
Protein ID:
unknown_similar_to_AMEV042
Kingdom:
euk

Quality

88.0 mean pLDDT

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 41-118
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lj2A00 1.20.5.970 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein 0.79 58.0 5.20e-01 80.8% 56.6%
2plyB01 1.10.10.2770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.77 41.0 3.35e-01 92.3% 29.7%
3unvA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.67 59.0 3.96e-01 100.0% 99.4%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 40.0 3.90e-01 85.9% 55.8%
1whyA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.64 44.0 4.58e-01 98.7% 77.8%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 41.0 4.42e-01 96.2% 82.5%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.63 46.0 3.28e-01 79.5% 96.8%
3dgpA00 3.30.70.2610 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 37.0 3.96e-01 93.6% 72.6%
1s7aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 3.89e-01 89.7% 55.3%
1w36B03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 50.0 3.40e-01 100.0% 72.2%
1h0hB02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 34.0 3.62e-01 96.2% 73.4%
1pjqA03 1.10.8.210 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Sirohaem synthase, dimerisation domain 0.53 37.0 3.98e-01 74.4% 87.7%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 36.0 3.82e-01 91.0% 80.9%
4f9cA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 37.0 2.84e-01 87.2% 30.6%
5unhA02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 46.0 3.15e-01 100.0% 65.1%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3515089 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.74 51.0 5.37e-01 96.2% 82.4%
3274487 605.1.1.155 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 0.73 61.0 4.67e-01 91.0% 89.7%
3351130 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.72 44.0 4.98e-01 94.9% 85.5%
3517171 604.8.1.3 ↗ alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Gpi1 0.71 58.0 4.27e-01 89.7% 82.9%
4420420 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 36.0 3.40e-01 88.5% 42.2%
3359944 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.70 44.0 4.98e-01 96.2% 89.1%
3596473 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 32.0 3.55e-01 93.6% 52.3%
3332869 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.68 38.0 4.40e-01 84.6% 82.0%
4989847 205.1.1.0 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.62 37.0 4.02e-01 94.9% 70.8%
4120350 205.1.1.35 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4+Fer4_7 0.61 35.0 3.95e-01 92.3% 78.2%
5049796 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 30.0 3.42e-01 83.3% 63.6%
None — 0.59 34.0 3.84e-01 96.2% 78.2%
4142865 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 49.0 3.46e-01 93.6% 56.8%
5082640 205.1.1.0 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.58 34.0 3.79e-01 96.2% 78.2%
5040941 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 3.87e-01 88.5% 61.0%
5008813 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 50.0 3.93e-01 98.7% 86.1%
3657024 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.56 37.0 3.16e-01 91.0% 41.6%
4534098 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.56 50.0 3.86e-01 100.0% 84.6%
3998582 3696.1.1.1 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.56 34.0 3.58e-01 97.4% 65.7%
3315837 148.1.3.276 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Myb_DNA-bind_3 0.53 39.0 4.09e-01 76.9% 88.6%
3296786 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.52 36.0 3.15e-01 70.5% 89.2%
3742347 2.1.1.52 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.52 37.0 3.46e-01 76.9% 73.0%
3661482 4120.1.1.56 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › Myb_DNA-bind_3 0.51 37.0 3.68e-01 88.5% 72.5%
4162127 320.4.1.8 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › PF27588 0.50 38.0 3.02e-01 85.9% 40.0%