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unnamed_protein_product
Euk-VirTurnip_vein-clearing_virus
unnamed_protein_product__NP_046152__Turnip_vein-clearing_virus__29272
Identity
- Accession:
- NP_046152 ↗
- Protein ID:
- unnamed_protein_product
- Kingdom:
- euk
Quality
75.8
mean pLDDT
Cluster
View cluster (21 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 364-469_499-535
D2
high
residues 670-809
Domain cluster:
rep: replicase__NP_059451__Soil-borne_cereal_mosaic_virus__100887__D845-991
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20896.3 best | ToMV_Hel_N | 78.8 | 7.10e-22 | 87.1% | 98.7% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vkwA01 | 3.30.450.420 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.90 | 88.0 | 8.55e-01 | 100.0% | 93.3% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.59 | 30.0 | 3.65e-01 | 96.4% | 75.9% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 34.0 | 4.18e-01 | 75.0% | 93.1% |
| 2wbiB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.57 | 38.0 | 3.68e-01 | 97.9% | 59.5% |
| 2h8aA00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.55 | 36.0 | 3.83e-01 | 93.6% | 76.0% |
| 4gf0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 30.0 | 3.35e-01 | 87.9% | 66.4% |
| 5xweA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.52 | 20.0 | 2.94e-01 | 85.0% | 84.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1323359 | 3590.1.1.0 ↗ | a+b complex topology › Tomato mosaic virus helicase N-terminal domain › Tomato mosaic virus helicase N-terminal domain › Tomato mosaic virus helicase N-terminal domain | 0.95 | 87.0 | 8.77e-01 | 100.0% | 94.2% |
| 3373524 | 310.2.1.26 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PigN | 0.57 | 39.0 | 2.86e-01 | 96.4% | 27.4% |
| 3411351 | 382.1.1.14 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF753 | 0.52 | 27.0 | 3.49e-01 | 92.9% | 89.3% |
| 3466195 | 10.13.1.0 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A | 0.52 | 42.0 | 2.72e-01 | 84.3% | 74.3% |
| 3276757 | 601.1.2.3 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › GCIP_C | 0.51 | 40.0 | 3.80e-01 | 97.1% | 70.3% |
| 4126506 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.51 | 19.0 | 2.97e-01 | 90.7% | 90.0% |
D3
high
residues 821-957
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01443.25 best | Viral_helicase1 | 99.8 | 3.00e-28 | 98.5% | 50.9% |
D4
high
residues 981-1099
Domain cluster:
rep: TGB1_protein__NP_619560__Garlic_latent_virus__12458__D129-228
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01443.25 best | Viral_helicase1 | 67.2 | 2.70e-18 | 80.7% | 31.1% |
D5
medium
residues 29-80
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dgdA01 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 46.0 | 3.90e-01 | 73.1% | 80.4% |
| 3snkA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 44.0 | 3.47e-01 | 71.2% | 47.1% |
| 1srrC00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 43.0 | 3.34e-01 | 71.2% | 67.8% |
| 1wu7A03 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.60 | 41.0 | 3.46e-01 | 73.1% | 63.9% |
| 3bc8A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.59 | 44.0 | 2.89e-01 | 80.8% | 80.9% |
| 2c7yA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.59 | 42.0 | 2.55e-01 | 78.8% | 50.4% |
| 3ffrA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.58 | 41.0 | 2.66e-01 | 76.9% | 89.5% |
| 3ke3A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.56 | 43.0 | 2.81e-01 | 86.5% | 62.2% |
| 2haeA01 | 3.40.50.10380 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Malic enzyme, N-terminal domain | 0.54 | 40.0 | 3.03e-01 | 86.5% | 76.3% |
| 4dzrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 37.0 | 2.70e-01 | 75.0% | 93.3% |
| 3rojA02 | 3.40.190.90 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.53 | 35.0 | 2.61e-01 | 71.2% | 34.1% |
| 3lbfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 36.0 | 2.50e-01 | 73.1% | 63.8% |
| 2pblA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 37.0 | 2.48e-01 | 76.9% | 57.6% |
| 1utbB02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 34.0 | 2.90e-01 | 71.2% | 69.7% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3592016 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 46.0 | 3.16e-01 | 71.2% | 52.2% |
| 3359929 | 7523.1.1.26 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_6 | 0.62 | 44.0 | 2.64e-01 | 76.9% | 64.4% |
| 3588183 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.62 | 44.0 | 2.86e-01 | 75.0% | 84.2% |
| 3477488 | 2002.1.1.189 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRMT5_TIM | 0.62 | 48.0 | 3.11e-01 | 94.2% | 16.6% |
| 4974488 | 7512.1.1.15 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyphos_transf | 0.61 | 47.0 | 3.24e-01 | 88.5% | 46.3% |
| 3742866 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 45.0 | 3.67e-01 | 80.8% | 63.8% |
| 4234203 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.61 | 41.0 | 3.81e-01 | 73.1% | 52.9% |
| 4941784 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 40.0 | 3.03e-01 | 71.2% | 80.0% |
| 4028448 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.58 | 42.0 | 2.67e-01 | 80.8% | 54.3% |
| 3480410 | 2003.1.14.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase | 0.57 | 40.0 | 2.96e-01 | 76.9% | 57.5% |
| 3715938 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.57 | 41.0 | 2.41e-01 | 75.0% | 92.3% |
| 5037390 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.57 | 40.0 | 3.01e-01 | 76.9% | 48.3% |
| 3737889 | 2007.2.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase2 | 0.54 | 37.0 | 2.61e-01 | 73.1% | 54.6% |
| 3578596 | 7559.1.1.1 ↗ | a/b three-layered sandwiches › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal_L4 | 0.52 | 38.0 | 2.89e-01 | 86.5% | 61.9% |
| 3794833 | 7568.1.1.1 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT | 0.52 | 41.0 | 2.77e-01 | 94.2% | 28.9% |
| 5026594 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.51 | 36.0 | 2.94e-01 | 76.9% | 87.6% |
| 2028773 | 7559.1.1.1 ↗ | a/b three-layered sandwiches › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal_L4 | 0.51 | 40.0 | 2.56e-01 | 88.5% | 25.8% |
D6
medium
residues 81-98_219-317
Domain cluster:
rep: methyltransferase__NP_835261__Indian_peanut_clump_virus__32629__D247-342
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01660.23 best | Vmethyltransf | 70.0 | 2.70e-19 | 100.0% | 33.8% |
D7
medium
residues 99-119_179-218
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eyqA04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 60.0 | 4.03e-01 | 100.0% | 41.0% |
| 1z6aA01 | 3.40.50.10810 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain | 0.63 | 52.0 | 3.78e-01 | 100.0% | 49.5% |
| 2yvaA00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.63 | 52.0 | 3.82e-01 | 100.0% | 52.8% |
| 2xauA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 52.0 | 3.82e-01 | 100.0% | 73.8% |
| 2q8pA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.61 | 50.0 | 4.55e-01 | 96.7% | 94.2% |
| 5lklB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 50.0 | 3.94e-01 | 100.0% | 70.8% |
| 2zskA01 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 46.0 | 3.91e-01 | 95.1% | 82.8% |
| 2d00A01 | 3.40.50.10580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ATPase, V1 complex, subunit F | 0.57 | 45.0 | 4.45e-01 | 93.4% | 98.5% |
| 2xblD00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.57 | 46.0 | 3.43e-01 | 100.0% | 54.4% |
| 2b4aA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 46.0 | 3.89e-01 | 96.7% | 62.1% |
| 1z56C01 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.53 | 42.0 | 3.36e-01 | 90.2% | 47.7% |
| 8esvA01 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.51 | 40.0 | 2.83e-01 | 91.8% | 72.7% |
| 6bk0A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.51 | 41.0 | 2.86e-01 | 98.4% | 39.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3449125 | 2003.1.1.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › TrkA_N | 0.58 | 48.0 | 3.58e-01 | 100.0% | 46.7% |
| 3836065 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.58 | 47.0 | 4.11e-01 | 96.7% | 69.0% |
| 4927143 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 49.0 | 3.83e-01 | 100.0% | 60.7% |
| 4132816 | 7529.1.1.3 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N | 0.57 | 46.0 | 3.43e-01 | 100.0% | 63.6% |
| 3476841 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.55 | 44.0 | 3.22e-01 | 96.7% | 64.4% |
| 3226406 | 2004.11.1.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_N | 0.52 | 37.0 | 2.48e-01 | 77.0% | 21.2% |
D8
medium
residues 120-178
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hqmC01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.60 | 44.0 | 3.07e-01 | 81.4% | 29.2% |
| 5xnyA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.57 | 47.0 | 3.11e-01 | 91.5% | 83.6% |
| 3ccgA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 47.0 | 3.36e-01 | 100.0% | 41.3% |
| 1ll1A01 | 1.20.1370.10 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Hemocyanin, N-terminal domain | 0.52 | 44.0 | 3.73e-01 | 94.9% | 60.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3583582 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.72 | 53.0 | 3.52e-01 | 79.7% | 43.6% |
| 4012864 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.67 | 56.0 | 3.92e-01 | 94.9% | 87.5% |