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unnamed_protein_product

Euk-Vir

Cyprinid_herpesvirus_3

unnamed_protein_product__YP_001096063__Cyprinid_herpesvirus_3__180230

Identity

Accession:
YP_001096063 ↗
Protein ID:
unnamed_protein_product
Kingdom:
euk

Quality

64.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Cyvirus› Cyprinid_herpesvirus_3

TaxID: 180230

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-137_296-331
PDB
D2 medium residues 138-295_332-358
PDB
Domain cluster: rep: protein_ORF22__YP_007003694__Cyprinid_herpesvirus_1__317858__D127-272
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 29.0 4.35e-01 73.5% 95.1%
2r01A02 2.20.180.10 Mainly Beta › Single Sheet › putative fmn-dependent nitroreductase like fold › putative fmn-dependent nitroreductase like domains 0.63 13.0 2.99e-01 75.7% 78.6%
4llfD02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 26.0 3.19e-01 73.0% 58.3%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 28.0 4.24e-01 74.1% 98.7%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 29.0 4.16e-01 74.6% 96.4%
2e7vA01 3.30.70.960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain 0.61 36.0 4.58e-01 78.4% 100.0%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 28.0 4.03e-01 74.1% 93.0%
2nzcB00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.60 27.0 4.04e-01 74.1% 96.3%
1sc6A03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 26.0 3.90e-01 78.4% 95.1%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 32.0 4.01e-01 73.0% 88.4%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 28.0 3.89e-01 74.1% 93.4%
1g84A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 26.0 3.31e-01 79.5% 70.5%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 27.0 3.89e-01 73.5% 98.8%
3i4hX02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 31.0 4.10e-01 74.1% 99.0%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.55 30.0 3.94e-01 78.4% 100.0%
2nwuB01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.55 33.0 3.83e-01 71.9% 84.1%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 31.0 3.93e-01 74.6% 94.4%
1r89A03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.54 32.0 3.70e-01 74.6% 79.1%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 27.0 3.64e-01 77.3% 92.8%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 31.0 3.94e-01 71.9% 98.2%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 25.0 3.53e-01 72.4% 100.0%
3hxiA01 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.51 33.0 3.47e-01 81.6% 69.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3679423 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 29.0 4.51e-01 75.7% 100.0%
3817811 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 28.0 4.02e-01 77.3% 84.7%
4941246 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 26.0 4.25e-01 73.5% 100.0%
3965651 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.64 28.0 4.30e-01 75.7% 100.0%
3815383 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 28.0 4.00e-01 77.8% 89.4%
3319316 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 27.0 4.11e-01 77.3% 100.0%
4936039 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.61 35.0 4.43e-01 76.8% 93.6%
3643150 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 27.0 3.79e-01 77.8% 85.9%
136544 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.61 28.0 4.13e-01 74.1% 100.0%
3825541 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.61 30.0 3.81e-01 80.5% 78.2%
4219210 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 35.0 4.34e-01 76.8% 93.6%
5051000 304.8.1.4 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.60 27.0 3.96e-01 74.6% 94.0%
3284562 304.8.1.9 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 0.59 28.0 4.01e-01 74.1% 95.3%
3659065 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.59 29.0 3.84e-01 77.8% 85.0%
3912039 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.59 36.0 4.49e-01 75.7% 100.0%
3369744 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 29.0 3.59e-01 78.4% 73.9%
3426109 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 32.0 4.00e-01 75.7% 89.1%
4403911 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.57 30.0 3.98e-01 79.5% 92.0%
4959305 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 38.0 4.55e-01 78.9% 100.0%
4662593 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.57 28.0 3.87e-01 78.9% 92.6%
3256920 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 29.0 3.51e-01 89.7% 73.6%
4304504 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.55 29.0 3.79e-01 78.9% 91.0%
4958412 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.55 37.0 4.33e-01 78.4% 99.2%
3763545 304.47.1.0 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.53 33.0 4.08e-01 73.0% 100.0%
3962699 309.1.1.4 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.51 29.0 3.19e-01 89.7% 64.5%
D3 medium residues 359-486
PDB
Domain cluster: rep: protein_ORF22__YP_007003694__Cyprinid_herpesvirus_1__317858__D315-425