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unnamed_protein_product
Euk-VirCyprinid_herpesvirus_3
unnamed_protein_product__YP_001096081__Cyprinid_herpesvirus_3__180230
Identity
- Accession:
- YP_001096081 ↗
- Protein ID:
- unnamed_protein_product
- Kingdom:
- euk
Quality
56.4
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Alloherpesviridae›
Cyvirus›
Cyprinid_herpesvirus_3
TaxID: 180230
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-95
D2
high
residues 123-250
D3
high
residues 369-454
D4
high
residues 463-566_623-678
Domain cluster:
rep: hypothetical_protein_H012_gp354__YP_007354538__Acanthamoeba_polyphaga_moumouvirus__1269028__D9-184
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 48.0 | 5.26e-01 | 98.8% | 91.4% |
| 5t0oA02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.64 | 41.0 | 4.94e-01 | 85.6% | 99.0% |
| 1nxiA00 | 3.30.70.970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like | 0.64 | 36.0 | 3.95e-01 | 96.9% | 65.9% |
| 2f5gA00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.63 | 40.0 | 4.40e-01 | 98.8% | 77.7% |
| 2r4fA03 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.62 | 44.0 | 5.05e-01 | 96.2% | 100.0% |
| 3pm9A04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 35.0 | 4.44e-01 | 73.8% | 100.0% |
| 4mt1A02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.61 | 39.0 | 4.72e-01 | 85.0% | 100.0% |
| 4limA00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.61 | 55.0 | 4.19e-01 | 100.0% | 75.1% |
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.61 | 55.0 | 4.66e-01 | 99.4% | 97.0% |
| 1q2lA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.60 | 46.0 | 4.11e-01 | 80.0% | 82.0% |
| 4bpuC00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.60 | 54.0 | 4.18e-01 | 100.0% | 72.5% |
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.60 | 36.0 | 4.51e-01 | 100.0% | 100.0% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 38.0 | 4.38e-01 | 81.2% | 87.9% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.60 | 37.0 | 4.40e-01 | 73.1% | 91.7% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 37.0 | 4.51e-01 | 98.1% | 100.0% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.59 | 51.0 | 4.78e-01 | 91.9% | 96.4% |
| 5xoyB02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 38.0 | 4.51e-01 | 96.9% | 99.1% |
| 1dobA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.57 | 32.0 | 3.37e-01 | 99.4% | 57.4% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.57 | 39.0 | 4.22e-01 | 93.1% | 81.9% |
| 1f08B00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.57 | 39.0 | 4.11e-01 | 96.9% | 77.2% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.56 | 40.0 | 4.49e-01 | 96.9% | 98.3% |
| 2ebeA00 | 3.30.70.2290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF3208) | 0.56 | 36.0 | 4.27e-01 | 71.9% | 98.1% |
| 1f3vA00 | 3.30.70.680 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TRADD, N-terminal domain | 0.54 | 45.0 | 4.53e-01 | 86.9% | 91.8% |
| 3go9A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.54 | 38.0 | 3.48e-01 | 72.5% | 87.6% |
| 6usmB01 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.54 | 42.0 | 4.43e-01 | 83.7% | 100.0% |
| 3r8jA00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.53 | 46.0 | 4.42e-01 | 92.5% | 85.0% |
| 1vdhA01 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.52 | 33.0 | 3.73e-01 | 97.5% | 84.3% |
| 3wraA01 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.51 | 38.0 | 3.07e-01 | 74.4% | 84.2% |
| 2g47A03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 39.0 | 3.46e-01 | 79.4% | 90.3% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.51 | 41.0 | 4.16e-01 | 86.9% | 92.6% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3677440 | 862.1.1.11 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP_C962R | 0.78 | 73.0 | 6.20e-01 | 98.8% | 70.2% |
| 3802060 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.78 | 73.0 | 6.11e-01 | 98.8% | 67.1% |
| 3937694 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.78 | 72.0 | 5.96e-01 | 97.5% | 65.3% |
| 4001493 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.78 | 72.0 | 6.15e-01 | 97.5% | 68.8% |
| 3512046 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.78 | 72.0 | 6.03e-01 | 98.1% | 69.0% |
| 3626314 | 862.1.1.11 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP_C962R | 0.77 | 72.0 | 6.07e-01 | 98.1% | 67.2% |
| 3910789 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.72 | 49.0 | 5.71e-01 | 95.0% | 95.7% |
| 3882670 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.71 | 47.0 | 5.61e-01 | 72.5% | 98.2% |
| 3993060 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.70 | 49.0 | 5.59e-01 | 96.9% | 95.0% |
| 3922606 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.69 | 48.0 | 5.41e-01 | 71.2% | 92.8% |
| 3598810 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.68 | 58.0 | 5.62e-01 | 96.9% | 80.6% |
| 1124197 | 304.141.1.1 ↗ | a+b two layers › Alpha-beta plaits › Avirulence Effector AvrLm4-7 › Avirulence Effector AvrLm4-7 › AvrLm4-7 | 0.67 | 48.0 | 5.26e-01 | 98.8% | 90.0% |
| 3407396 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.66 | 48.0 | 5.50e-01 | 96.2% | 100.0% |
| 3889973 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.66 | 48.0 | 5.33e-01 | 96.9% | 95.2% |
| 3750557 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.65 | 45.0 | 5.24e-01 | 98.1% | 99.1% |
| 4274346 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.65 | 39.0 | 4.79e-01 | 73.1% | 96.9% |
| 3588477 | 304.31.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red | 0.64 | 44.0 | 5.11e-01 | 95.6% | 100.0% |
| 4969505 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.63 | 42.0 | 4.88e-01 | 95.6% | 98.2% |
| 3613400 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.63 | 45.0 | 5.14e-01 | 95.6% | 100.0% |
| 1491756 | 304.55.1.9 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PV_NSP1 | 0.61 | 56.0 | 4.83e-01 | 99.4% | 92.7% |
| 4183108 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.60 | 49.0 | 4.71e-01 | 91.9% | 76.7% |
| 5046168 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.60 | 38.0 | 3.35e-01 | 71.9% | 42.5% |
| None | — | 0.58 | 49.0 | 4.21e-01 | 89.4% | 85.7% | |
| 3369213 | 304.28.1.25 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Helitron_like_N, REP_ORF2-G2P | 0.58 | 48.0 | 4.44e-01 | 87.5% | 86.9% |
| 3226535 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.58 | 38.0 | 3.20e-01 | 71.9% | 38.2% |
| 3683125 | 304.8.1.64 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P | 0.57 | 48.0 | 4.36e-01 | 89.4% | 85.6% |
| 3682007 | 304.8.1.64 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P | 0.57 | 48.0 | 4.47e-01 | 89.4% | 77.9% |
| 5075567 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.56 | 38.0 | 4.44e-01 | 96.2% | 99.1% |
| 3652924 | 309.1.1.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase | 0.56 | 40.0 | 3.49e-01 | 72.5% | 81.3% |
| 4004285 | 309.1.1.4 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C | 0.56 | 39.0 | 3.46e-01 | 71.9% | 81.7% |
| 2834623 | 304.55.1.7 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_N | 0.56 | 47.0 | 4.61e-01 | 90.0% | 97.1% |
| 4965189 | 304.8.1.126 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26475 | 0.55 | 48.0 | 4.56e-01 | 99.4% | 80.5% |
| 5372 | 304.49.1.1 ↗ | a+b two layers › Alpha-beta plaits › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD_N | 0.54 | 45.0 | 4.53e-01 | 86.9% | 91.8% |
| 3414433 | 304.4.1.52 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7153 | 0.53 | 43.0 | 3.71e-01 | 86.9% | 89.7% |
| 3679255 | 304.55.1.15 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N | 0.53 | 38.0 | 4.18e-01 | 86.9% | 91.5% |
| 3545806 | 509.1.1.15 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › SGT1 | 0.52 | 41.0 | 3.88e-01 | 81.9% | 82.6% |
| 3773609 | 304.15.1.6 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain › SGT1 | 0.52 | 40.0 | 3.85e-01 | 81.2% | 82.6% |
| 3372782 | 304.8.1.64 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P | 0.52 | 45.0 | 4.15e-01 | 93.1% | 85.9% |
| 3931669 | 304.4.1.54 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless | 0.51 | 36.0 | 3.73e-01 | 71.2% | 76.0% |
| 4013327 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.51 | 30.0 | 3.47e-01 | 85.6% | 81.8% |
| 4030594 | 304.46.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G | 0.50 | 41.0 | 4.12e-01 | 86.9% | 91.9% |
| 4366330 | 304.20.1.5 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f | 0.50 | 45.0 | 4.48e-01 | 100.0% | 94.5% |
D5
high
residues 719-808