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unnamed_protein_product

Euk-Vir

Cyprinid_herpesvirus_3

unnamed_protein_product__YP_001096106__Cyprinid_herpesvirus_3__180230

Identity

Accession:
YP_001096106 ↗
Protein ID:
unnamed_protein_product
Kingdom:
euk

Quality

70.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Cyvirus› Cyprinid_herpesvirus_3

TaxID: 180230

Cluster

View cluster (90 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 147-209_284-295_314-385
PDB
Domain cluster: rep: helicase-primase_helicase_subunit__YP_182390__Gallid_alphaherpesvirus_1__10386__D20-50_77-125_223-233_262-273_312-326_821-840
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01443.25 best Viral_helicase1 26.3 8.40e-06 64.6% 41.7%
PF13604.13 AAA_30 36.7 5.40e-09 62.6% 50.3%
D2 medium residues 210-283_296-313
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3brjC00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.60 41.0 3.48e-01 70.7% 50.3%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.59 36.0 3.86e-01 85.9% 70.4%
1z21A00 1.10.10.1000 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain 0.55 39.0 3.94e-01 100.0% 72.9%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.54 46.0 4.07e-01 97.8% 97.9%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 39.0 3.68e-01 77.2% 76.8%
4yt3A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 47.0 3.12e-01 100.0% 54.6%
5k7fA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 40.0 3.49e-01 88.0% 52.9%
4o1eB00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.51 40.0 2.94e-01 85.9% 86.9%
4lqkA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.51 36.0 3.26e-01 79.3% 52.3%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.51 38.0 3.95e-01 94.6% 85.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3166992 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.59 41.0 4.40e-01 84.8% 88.0%
5043828 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 45.0 2.97e-01 83.7% 26.8%
5051886 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.57 44.0 4.69e-01 88.0% 95.0%
4014527 532.2.1.0 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.55 40.0 4.04e-01 87.0% 76.8%
3178084 3817.1.1.1 ↗ alpha bundles › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Pex19 0.53 35.0 3.42e-01 91.3% 62.0%
3329196 604.6.1.1 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.52 39.0 3.88e-01 91.3% 74.0%
3928678 109.4.1.669 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8,TTC7_N 0.52 38.0 2.27e-01 91.3% 10.5%
4025757 603.1.1.6 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.52 41.0 3.21e-01 88.0% 42.3%
5022013 632.7.1.61 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › BREX_BrxC_helical 0.51 36.0 3.32e-01 73.9% 64.2%
3630240 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.51 40.0 2.39e-01 88.0% 14.3%
3647188 3930.1.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.51 40.0 3.74e-01 88.0% 75.8%
D3 medium residues 386-431_534-616
PDB
Domain cluster: rep: helicase__YP_009701593__Heliothis_virescens_ascovirus_3f__328614__D186-233_381-434
D4 medium residues 432-533
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 44.0 5.13e-01 73.5% 82.2%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 42.0 4.71e-01 73.5% 71.2%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 42.0 4.30e-01 74.5% 58.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.70e-01 71.6% 92.0%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.52 31.0 3.71e-01 100.0% 89.9%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002449 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 41.0 5.64e-01 100.0% 89.1%
5056706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 40.0 5.82e-01 100.0% 96.0%
4982334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 39.0 5.33e-01 100.0% 87.3%
3508441 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 47.0 4.92e-01 72.5% 64.2%
4966534 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 38.0 5.30e-01 100.0% 96.0%
3596676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 45.0 4.79e-01 72.5% 65.6%
3535190 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 45.0 4.77e-01 72.5% 65.6%
153172 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 44.0 4.67e-01 73.5% 64.4%
3883165 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 44.0 4.53e-01 73.5% 60.0%
3840679 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 45.0 4.70e-01 73.5% 64.2%
3483289 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 44.0 5.44e-01 99.0% 92.3%
3622137 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 44.0 4.71e-01 73.5% 66.7%
3883161 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 45.0 4.77e-01 73.5% 67.8%
4026282 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 43.0 4.63e-01 73.5% 65.6%
3768095 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 43.0 4.45e-01 71.6% 61.1%
3547093 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 44.0 4.68e-01 74.5% 66.7%
3407853 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 42.0 4.44e-01 73.5% 63.3%
3609031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 45.0 4.63e-01 73.5% 63.0%
3879068 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 41.0 4.47e-01 73.5% 65.9%
3628131 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 43.0 4.39e-01 73.5% 60.0%
3547102 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 44.0 4.78e-01 73.5% 71.8%
3877938 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 44.0 4.71e-01 74.5% 68.9%
3464671 4.1.1.136 ↗ beta barrels › SH3 › SH3 › SH3 › NMD_SH3 0.73 44.0 5.17e-01 100.0% 87.1%
2028019 4.1.1.136 ↗ beta barrels › SH3 › SH3 › SH3 › NMD_SH3 0.73 43.0 5.25e-01 99.0% 92.4%
3221094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 62.0 5.99e-01 100.0% 95.7%
3502388 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.82e-01 89.2% 96.0%
3819340 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.51 48.0 4.50e-01 99.0% 85.8%