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unnamed_protein_product

Euk-Vir

Cyprinid_herpesvirus_3

unnamed_protein_product__YP_001096163__Cyprinid_herpesvirus_3__180230

Identity

Accession:
YP_001096163 ↗
Protein ID:
unnamed_protein_product
Kingdom:
euk

Quality

56.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Cyvirus› Cyprinid_herpesvirus_3

TaxID: 180230

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 279-443
PDB
D2 medium residues 1-75_248-278
PDB
Domain cluster: representative
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF13445.13 best zf-RING_UBOX 29.1 1.10e-06 43.4% 64.1%
PF00097.32 zf-C3HC4 21.8 2.00e-04 32.1% 67.5%
PF15227.13 zf-C3HC4_4 32.2 1.30e-07 30.2% 61.9%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y43A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.86 59.0 6.51e-01 70.8% 88.6%
1jm7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.83 57.0 5.82e-01 70.8% 77.7%
2cklA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.82 56.0 5.89e-01 70.8% 83.7%
4wz0A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.81 56.0 5.59e-01 70.8% 74.3%
1jm7B00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.80 55.0 5.77e-01 70.8% 81.4%
2dloA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.56 28.0 3.21e-01 88.7% 63.0%
1iq8A01 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.54 37.0 2.56e-01 96.2% 20.8%
5fb0C01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 28.0 3.42e-01 86.8% 88.5%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3917118 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.89 61.0 6.35e-01 70.8% 80.0%
3865539 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.89 61.0 6.66e-01 70.8% 94.4%
3259236 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.89 61.0 6.33e-01 70.8% 85.0%
3906153 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.88 61.0 6.65e-01 70.8% 93.3%
3752884 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.88 61.0 6.62e-01 70.8% 86.7%
3851250 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.88 61.0 6.58e-01 70.8% 86.7%
3749618 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.88 61.0 6.27e-01 70.8% 84.0%
3687508 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.88 60.0 5.67e-01 70.8% 61.6%
3879711 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.87 60.0 6.23e-01 70.8% 83.0%
4463766 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.87 60.0 6.73e-01 70.8% 90.6%
None — 0.86 60.0 6.67e-01 70.8% 94.1%
3556596 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.86 59.0 6.45e-01 70.8% 93.3%
3843756 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.86 59.0 6.30e-01 70.8% 96.8%
3876355 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.86 59.0 5.57e-01 70.8% 84.0%
3905886 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.86 59.0 6.44e-01 70.8% 94.4%
3529449 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.86 59.0 6.43e-01 70.8% 93.3%
3789440 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.85 59.0 5.45e-01 70.8% 59.2%
3868349 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.85 59.0 6.59e-01 70.8% 94.1%
3708262 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.85 59.0 6.38e-01 70.8% 86.7%
3430514 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.85 59.0 6.55e-01 70.8% 90.6%
3651050 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.85 59.0 6.35e-01 70.8% 85.6%
3559876 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.85 58.0 6.04e-01 70.8% 83.0%
3549440 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.84 58.0 6.30e-01 70.8% 88.9%
3821195 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.83 58.0 6.09e-01 70.8% 81.1%
3481026 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.83 57.0 6.23e-01 70.8% 86.7%
3739407 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.83 57.0 6.58e-01 70.8% 98.8%
3849195 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.83 57.0 5.07e-01 70.8% 53.8%
3915740 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.83 57.0 6.06e-01 70.8% 89.5%
3876194 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.82 57.0 6.01e-01 70.8% 93.7%
3492288 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.80 59.0 5.89e-01 76.4% 94.5%
3688647 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.74 51.0 5.49e-01 70.8% 83.9%
4012449 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.74 51.0 5.69e-01 70.8% 91.8%