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unnamed_protein_product

Euk-Vir

Astrovirus_MLB2

unnamed_protein_product__YP_004934008__Astrovirus_MLB2__683172

Identity

Accession:
YP_004934008 ↗
Protein ID:
unnamed_protein_product
Kingdom:
euk

Quality

67.9 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Stellavirales› Astroviridae› Astrovirus_MLB2

TaxID: 683172

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-112
PDB
Domain cluster: rep: ORF1a__YP_009010969__Porcine_astrovirus_5__1093928__D1-101
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 53.0 3.43e-01 91.3% 58.5%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.62 47.0 4.30e-01 79.8% 88.3%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.61 49.0 3.51e-01 86.5% 71.5%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 49.0 3.39e-01 85.6% 57.6%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.60 49.0 3.52e-01 89.4% 67.0%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.38e-01 89.4% 46.3%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 28.0 3.45e-01 73.1% 72.3%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 3.27e-01 90.4% 78.8%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 3.15e-01 90.4% 88.6%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 38.0 3.91e-01 99.0% 75.8%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.88e-01 81.7% 100.0%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.39e-01 74.0% 58.9%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.51 36.0 3.44e-01 74.0% 91.9%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 28.0 3.46e-01 89.4% 98.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3904275 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.64 55.0 3.50e-01 91.3% 58.5%
2442052 5.1.3.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Fungal_lectin 0.62 47.0 4.27e-01 80.8% 85.3%
4014168 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 49.0 3.46e-01 87.5% 93.3%
3592067 243.4.1.0 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.60 44.0 3.73e-01 77.9% 59.4%
3254995 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 49.0 3.17e-01 88.5% 42.1%
3598659 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 46.0 3.11e-01 84.6% 31.3%
3815957 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.58 47.0 3.34e-01 88.5% 51.9%
3743052 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.57 45.0 3.05e-01 88.5% 33.1%
3488451 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 3.21e-01 94.2% 78.3%
4677426 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.56 44.0 3.57e-01 82.7% 93.2%
3519803 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.54 42.0 3.48e-01 83.7% 92.6%
5016199 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.54 38.0 3.58e-01 76.0% 82.2%
4943626 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.52 38.0 3.67e-01 76.9% 75.8%
5024241 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.52 37.0 3.86e-01 76.0% 93.7%
3964222 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 40.0 3.39e-01 82.7% 71.2%
3681567 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 37.0 2.40e-01 76.0% 77.6%
3629488 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.51 31.0 3.08e-01 76.0% 56.5%
5029238 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.50 36.0 3.74e-01 76.9% 91.0%
D2 high residues 671-761
PDB
D3 medium residues 148-291
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u5kA02 1.20.1440.120 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain 0.54 38.0 4.09e-01 85.4% 84.8%
4bg5B00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.53 37.0 3.32e-01 70.8% 99.0%
2yinA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.52 26.0 2.77e-01 75.0% 50.0%
1o5hA00 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.50 41.0 3.64e-01 85.4% 91.5%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3568113 174.1.1.14 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › NKAIN 0.53 30.0 3.29e-01 85.4% 65.8%
3939354 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.51 30.0 3.10e-01 86.8% 59.3%
D4 medium residues 292-344
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d8dB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.84 71.0 6.05e-01 94.3% 59.0%
1dliA03 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.84 60.0 4.95e-01 79.2% 44.4%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.81 62.0 4.68e-01 83.0% 36.6%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 58.0 5.26e-01 79.2% 64.8%
5fmnA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.74 57.0 4.85e-01 86.8% 51.2%
3d1lA02 1.10.1040.20 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › ProC-like, C-terminal domain 0.74 64.0 5.24e-01 98.1% 53.5%
1nh2B00 1.10.287.100 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 55.0 5.83e-01 90.6% 100.0%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 39.0 3.74e-01 73.6% 50.8%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.65 49.0 4.48e-01 84.9% 61.4%
6k9pB02 1.20.1300.20 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 0.63 49.0 3.53e-01 84.9% 36.8%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 36.0 3.61e-01 71.7% 55.4%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.57 42.0 4.46e-01 81.1% 89.4%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 35.0 3.09e-01 71.7% 37.6%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.34e-01 84.9% 90.4%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.54 37.0 3.21e-01 77.4% 43.3%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
56856 164.1.1.0 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.84 71.0 6.12e-01 94.3% 61.3%
3252433 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 56.0 3.42e-01 81.1% 14.3%
None — 0.67 44.0 2.69e-01 71.7% 10.1%
3955892 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.59 40.0 4.09e-01 79.2% 74.0%
D5 medium residues 345-397_464-545
PDB
D6 medium residues 398-463
PDB
Domain cluster: rep: ORF1a__YP_009162618__Dromedary_astrovirus__1662272__D428-481