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unnamed_protein_product
Euk-VirAstrovirus_MLB2
unnamed_protein_product__YP_004934010__Astrovirus_MLB2__683172
Identity
- Accession:
- YP_004934010 ↗
- Protein ID:
- unnamed_protein_product
- Kingdom:
- euk
Quality
58.7
mean pLDDT
Taxonomy
TaxID: 683172
Cluster
View cluster (25 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 66-249
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03115.21 best | Astro_capsid_N | 217.2 | 3.30e-64 | 96.7% | 72.3% |
D2
high
residues 254-391
Domain cluster:
rep: capsid_protein__NP_056788__Hepeviridae__291484__D322-442
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ztnA02 | 2.40.30.190 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.77 | 66.0 | 6.60e-01 | 100.0% | 87.9% |
| 2ipqX02 | 2.40.10.200 | Mainly Beta › Beta Barrel › Thrombin, subunit H › STY4665 C-terminal domain-like | 0.57 | 31.0 | 4.07e-01 | 90.6% | 94.8% |
| 3shrA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 35.0 | 3.53e-01 | 100.0% | 60.6% |
| 1xjaB00 | 2.60.120.280 | Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC | 0.56 | 33.0 | 3.21e-01 | 100.0% | 51.3% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.55 | 39.0 | 4.08e-01 | 87.7% | 79.8% |
| 5c94A00 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.54 | 34.0 | 3.63e-01 | 90.6% | 72.4% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 28.0 | 3.16e-01 | 82.6% | 67.9% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 26.0 | 3.04e-01 | 82.6% | 67.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1877513 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.82 | 67.0 | 7.08e-01 | 89.1% | 93.6% |
| 397625 | 1.1.13.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › SP2_M | 0.76 | 65.0 | 6.51e-01 | 100.0% | 88.6% |
| 3481883 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 42.0 | 4.24e-01 | 98.6% | 72.6% |
| 3187986 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.59 | 33.0 | 3.74e-01 | 84.8% | 71.4% |
| 3907178 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 40.0 | 4.51e-01 | 100.0% | 96.2% |
| 3981111 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.57 | 41.0 | 3.99e-01 | 99.3% | 67.1% |
| 5007131 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.57 | 38.0 | 4.43e-01 | 99.3% | 100.0% |
| 4372074 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.56 | 41.0 | 4.09e-01 | 98.6% | 74.3% |
| 3256920 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 40.0 | 4.24e-01 | 100.0% | 83.2% |
| 3973282 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.55 | 41.0 | 4.49e-01 | 99.3% | 98.2% |
| 3973696 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 40.0 | 4.16e-01 | 99.3% | 82.4% |
| 1914511 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.55 | 37.0 | 3.89e-01 | 88.4% | 74.8% |
| 4551243 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.55 | 38.0 | 3.95e-01 | 88.4% | 77.6% |
| 4062509 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.54 | 38.0 | 4.24e-01 | 98.6% | 94.3% |
| 5038876 | 1.1.13.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach | 0.54 | 32.0 | 3.82e-01 | 74.6% | 87.8% |
| 4402697 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.54 | 38.0 | 3.99e-01 | 88.4% | 81.7% |
| 4271412 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.54 | 32.0 | 3.05e-01 | 100.0% | 47.9% |
| 4441129 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.54 | 38.0 | 4.09e-01 | 100.0% | 84.2% |
| 4319057 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.53 | 36.0 | 3.88e-01 | 88.4% | 82.6% |
| 4273561 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.53 | 40.0 | 4.04e-01 | 100.0% | 79.3% |
| 4094235 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.53 | 37.0 | 3.87e-01 | 87.7% | 80.0% |
| 3988859 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.52 | 35.0 | 3.94e-01 | 88.4% | 89.5% |
| 4970796 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 37.0 | 4.16e-01 | 97.8% | 100.0% |
| 3784272 | 1.1.7.102 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 | 0.52 | 42.0 | 4.45e-01 | 98.6% | 99.2% |
| 4562905 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.51 | 37.0 | 3.86e-01 | 89.9% | 81.6% |
| 4538400 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.50 | 37.0 | 3.83e-01 | 89.9% | 81.5% |
D3
high
residues 426-450_468-549_571-623
D4
medium
residues 676-742
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12226.15 best | Astro_capsid_p | 38.9 | 8.40e-10 | 98.5% | 15.7% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jndA01 | 1.10.1740.220 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.89 | 44.0 | 3.45e-01 | 92.5% | 26.2% |
| 1dofA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.85 | 39.0 | 4.25e-01 | 94.0% | 53.6% |
| 3triA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.80 | 45.0 | 3.79e-01 | 97.0% | 36.9% |
| 2dg7A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.76 | 46.0 | 3.19e-01 | 100.0% | 22.0% |
| 4jkzA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 51.0 | 3.67e-01 | 89.6% | 54.7% |
| 2c5qA00 | 3.50.30.40 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like | 0.60 | 49.0 | 3.39e-01 | 89.6% | 97.8% |
| 3mbhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.57 | 50.0 | 3.22e-01 | 94.0% | 70.2% |
| 4m5bA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.56 | 52.0 | 3.56e-01 | 100.0% | 66.8% |
| 2ddmB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 49.0 | 3.14e-01 | 94.0% | 72.0% |
| 3bqyA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 39.0 | 3.16e-01 | 85.1% | 52.0% |
| 3c3dA02 | 1.10.8.240 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain | 0.51 | 44.0 | 4.01e-01 | 100.0% | 71.6% |
| 6wb4B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 44.0 | 2.84e-01 | 97.0% | 55.7% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4990523 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.78 | 45.0 | 3.91e-01 | 95.5% | 41.1% |
| 5030521 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.63 | 43.0 | 3.48e-01 | 70.1% | 85.6% |
| 4942810 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.59 | 44.0 | 3.48e-01 | 79.1% | 79.3% |
| 5027860 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.59 | 42.0 | 3.49e-01 | 76.1% | 86.4% |
| 5056253 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.59 | 43.0 | 3.64e-01 | 80.6% | 93.3% |
| 1247957 | 191.1.1.18 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_14 | 0.59 | 45.0 | 3.69e-01 | 80.6% | 57.9% |
| 3279865 | 5067.1.1.4 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL | 0.56 | 41.0 | 2.45e-01 | 76.1% | 10.7% |
| 5056690 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.56 | 40.0 | 3.38e-01 | 79.1% | 87.2% |
| 4964693 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.55 | 46.0 | 3.59e-01 | 89.6% | 77.9% |
| 3781644 | 5067.1.1.5 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing | 0.55 | 46.0 | 3.06e-01 | 89.6% | 95.0% |
| 4286470 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.54 | 37.0 | 2.72e-01 | 74.6% | 24.9% |
| 4968262 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.53 | 39.0 | 3.39e-01 | 80.6% | 100.0% |
| 4890335 | 5067.1.1.4 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL | 0.53 | 43.0 | 3.17e-01 | 88.1% | 53.8% |
| 4938615 | 5067.1.1.4 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL | 0.52 | 42.0 | 3.05e-01 | 86.6% | 35.6% |
| 4250419 | 2005.1.1.25 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 | 0.52 | 46.0 | 2.74e-01 | 94.0% | 16.9% |
| 3957878 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 44.0 | 3.48e-01 | 95.5% | 73.6% |
| 4940368 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.51 | 41.0 | 3.40e-01 | 91.0% | 83.2% |
| 5009371 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.50 | 46.0 | 3.69e-01 | 100.0% | 79.2% |