unnamed_protein_product

Euk-Vir

Canary_polyomavirus

unnamed_protein_product__YP_005454255__Canary_polyomavirus__881945

Identity

83.9 mean pLDDT

View cluster (129 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59

PDB

Domain cluster: rep: PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00019__D3-53

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00226.37 best	DnaJ	40.3	3.70e-10	87.7%	69.8%

D2 high residues 137-242

PDB

Domain cluster: rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D167-268

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02217.23 best	T_Ag_DNA_bind	91.5	5.80e-26	81.1%	90.4%

D3 high residues 256-345

PDB

Domain cluster: rep: ORF01L__YP_009252373__Marbled_eel_polyomavirus__1662286__D415-505

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	56.3	3.70e-15	100.0%	19.2%

D4 medium residues 346-424_540-619

PDB

Domain cluster: rep: large_T_antigen__YP_007195293__Alphapolyomavirus_septipanos__1891739__D391-454_582-665

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	33.8	2.60e-08	64.8%	19.4%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1svmA02	1.20.1050.70	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Large T antigen, SV40, domain 3	0.84	61.0	7.06e-01	96.9%	100.0%
3rbtA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.59	34.0	3.92e-01	91.8%	76.1%
2kmfA01	1.20.58.810	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27	0.55	29.0	3.53e-01	96.2%	76.5%
3o8jA02	1.10.230.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2	0.53	29.0	3.52e-01	85.5%	82.8%
2wh5A00	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.53	24.0	2.98e-01	84.9%	66.7%
1ca1A01	1.10.575.10	Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease	0.51	31.0	2.74e-01	88.1%	37.6%
1ecaA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.50	30.0	3.22e-01	93.7%	66.2%

D5 medium residues 425-539

PDB

Domain cluster: rep: large_T_antigen__YP_009553187__Philantomba_monticola_polyomavirus_1__2170411__D436-450_495-593

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	142.9	2.00e-41	100.0%	27.6%