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uracil-DNA_glycosylase

Euk-Vir

Pandoravirus_inopinatum

uracil-DNA_glycosylase__YP_009119178__Pandoravirus_inopinatum__1605721

Identity

Accession:: YP_009119178 ↗
Protein ID:: uracil-DNA_glycosylase
Kingdom:: euk

Quality

64.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 228-421

PDB

Domain cluster: rep: MK016493.1__AYQ99350.1__PBI_CANTARE_130__00130__D75-228

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03167.26 best	UDG	60.3	3.20e-16	87.1%	97.9%

D2 medium residues 13-89_161-176

PDB

D3 medium residues 177-227

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3e0sA00	1.40.20.10	Mainly Alpha › Alpha solenoid › CHAD domain › CHAD domain	0.65	47.0	2.94e-01	78.4%	43.6%
2ebiA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.63	41.0	3.76e-01	72.5%	51.5%
7qovB01	1.10.472.20	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit	0.60	43.0	3.38e-01	96.1%	36.1%
2w02B01	1.10.150.640	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle	0.60	44.0	3.95e-01	80.4%	90.5%
2i7hA00	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.58	50.0	3.43e-01	100.0%	44.9%
3rm5B02	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.57	45.0	3.07e-01	94.1%	89.3%
3ez0C00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.56	46.0	3.08e-01	92.2%	81.7%
2pusA05	1.10.1740.80	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A ›	0.56	40.0	3.47e-01	94.1%	48.8%
4cybD00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.54	43.0	2.97e-01	86.3%	52.6%
3zgxA02	6.10.140.1720	Special › Helix non-globular › Helix Hairpins ›	0.54	38.0	3.14e-01	74.5%	41.8%
1qr0A01	3.90.470.20	Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain	0.53	43.0	3.37e-01	96.1%	52.0%
4kjmA02	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.52	39.0	3.85e-01	82.4%	90.9%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4931231	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.63	47.0	3.14e-01	94.1%	20.5%
5069402	632.23.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I	0.59	46.0	4.19e-01	86.3%	71.4%
3265419	1128.1.1.0 ↗	alpha bundles › LYR protein › LYR protein › LYR protein	0.56	45.0	4.00e-01	96.1%	92.5%
4962704	3317.1.1.8 ↗	alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › DUF7119	0.54	41.0	3.86e-01	100.0%	66.2%
3359616	301.8.1.3 ↗	a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N	0.53	42.0	3.24e-01	94.1%	49.3%
4253748	3317.1.1.2 ↗	alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB	0.52	45.0	3.91e-01	94.1%	64.0%
3229408	102.1.1.16 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2	0.52	39.0	3.36e-01	86.3%	86.7%