v2

Euk-Vir

Limeum_africanum_associated_virus

v2__YP_009465968__Limeum_africanum_associated_virus__2093276

Identity

59.9 mean pLDDT

Shotokuvirae› Cressdnaviricota› Repensiviricetes› Geplafuvirales› Geminiviridae› Limeum_africanum_associated_virus

TaxID: 2093276

View cluster (6 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-81

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07325.17 best	Curto_V2	92.1	3.60e-26	100.0%	60.3%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6lumD01	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.66	53.0	4.43e-01	85.5%	80.0%
4hfvA01	1.20.1440.330	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.63	54.0	4.68e-01	93.4%	66.7%
3nctA00	3.40.50.11880	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein	0.59	43.0	3.57e-01	76.3%	70.1%
1ekjA00	3.40.1050.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase	0.52	46.0	3.35e-01	98.7%	44.8%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3588144	101.1.1.5 ↗	alpha arrays › HTH › HTH › Three-helical HTH › TetR_N	0.62	54.0	4.02e-01	97.4%	63.9%
3484700	4.8.1.10 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like	0.58	51.0	4.66e-01	97.4%	89.0%
5067234	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.58	43.0	4.50e-01	78.9%	85.7%
3382752	109.4.1.1275 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long, TPR_24	0.51	36.0	2.16e-01	76.3%	13.2%