←Back to structures

vIRF-4

Euk-Vir

Human_gammaherpesvirus_8

vIRF-4__YP_001129412__Human_gammaherpesvirus_8__37296

Identity

Accession:
YP_001129412 ↗
Protein ID:
vIRF-4
Kingdom:
euk

Quality

51.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Human_gammaherpesvirus_8

TaxID: 37296

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-112
PDB
Domain cluster: rep: N9-5__YP_010084611__Macaca_nemestrina_rhadinovirus_2__123630__D17-120
D2 high residues 731-910
PDB
Domain cluster: rep: JM98__YP_238401__Macaca_fuscata_rhadinovirus__272551__D238-410
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5bviA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.76 68.0 6.82e-01 100.0% 92.3%
3dshA01 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.75 71.0 6.81e-01 100.0% 92.6%
1zoqA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.73 69.0 6.80e-01 100.0% 93.7%
7cd1D01 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.71 62.0 6.32e-01 95.6% 94.3%
4r9pA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.70 66.0 6.23e-01 99.4% 85.2%
4h87A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.69 42.0 5.03e-01 98.3% 88.7%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 34.0 4.57e-01 98.3% 98.9%
1mzkA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.64 42.0 5.00e-01 97.8% 97.5%
3ld7A00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.62 32.0 4.35e-01 98.9% 100.0%
2lw6A00 2.60.320.40 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.61 29.0 4.05e-01 100.0% 96.2%
1ok0A00 2.60.40.20 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor 0.55 25.0 3.68e-01 83.9% 100.0%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 23.0 2.83e-01 97.8% 57.1%
1d2oA01 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.53 28.0 3.49e-01 80.0% 83.2%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.52 24.0 3.51e-01 97.8% 95.2%
1jz7A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 29.0 3.68e-01 70.6% 95.3%
3b2dC00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 35.0 3.88e-01 97.2% 90.6%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 31.0 3.78e-01 82.8% 100.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3490466 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.80 58.0 6.68e-01 83.3% 99.3%
3912381 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.78 74.0 6.85e-01 100.0% 81.4%
3470623 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.77 71.0 6.83e-01 100.0% 87.5%
3899206 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.75 69.0 6.60e-01 100.0% 84.9%
169139 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.75 71.0 6.41e-01 100.0% 79.2%
3914798 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.74 71.0 6.81e-01 100.0% 92.5%
3772155 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.74 71.0 6.47e-01 100.0% 79.6%
2142307 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.73 65.0 6.44e-01 100.0% 88.4%
3895000 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.73 68.0 6.62e-01 100.0% 89.9%
3887924 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.73 69.0 6.58e-01 100.0% 88.3%
3234709 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.73 69.0 6.50e-01 100.0% 88.5%
3933148 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.72 67.0 6.24e-01 100.0% 80.9%
3912511 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.72 68.0 6.50e-01 100.0% 88.8%
2069 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.72 68.0 6.08e-01 100.0% 74.5%
3933647 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.72 67.0 6.47e-01 99.4% 89.0%
3999204 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.72 67.0 6.56e-01 99.4% 91.8%
3247678 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.72 68.0 6.60e-01 100.0% 94.9%
2722184 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.70 62.0 6.28e-01 97.2% 93.3%
3180498 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.70 35.0 4.84e-01 70.6% 96.6%
3617335 382.1.1.2 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.69 23.0 3.97e-01 100.0% 86.2%
3953385 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.68 16.0 3.48e-01 95.0% 90.0%
4940958 223.8.1.0 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain 0.66 20.0 2.89e-01 97.2% 54.7%
4269845 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.62 27.0 3.37e-01 98.3% 63.6%
4677520 701.1.1.1 ↗ beta sandwiches › alpha-Amylase inhibitor tendamistat › alpha-Amylase inhibitor tendamistat › alpha-Amylase inhibitor tendamistat › A_amylase_inhib 0.57 26.0 3.75e-01 81.7% 98.7%
5042718 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 21.0 3.22e-01 97.8% 80.0%
3273772 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 22.0 3.19e-01 100.0% 83.5%
3940218 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.51 28.0 3.68e-01 98.9% 98.9%
4899978 11.1.1.203 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 0.50 29.0 3.66e-01 86.1% 96.2%