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vef

Euk-Vir

Euproctis_pseudoconspersa_nucleopolyhedrovirus

vef__YP_002854632__Euproctis_pseudoconspersa_nucleopolyhedrovirus__307467

Identity

Accession:: YP_002854632 ↗
Protein ID:: vef
Kingdom:: euk

Quality

71.1 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Euproctis_pseudoconspersa_nucleopolyhedrovirus

TaxID: 307467

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 282-446

PDB

D2 high residues 454-552

PDB

Domain cluster: rep: enhancin-1__YP_009345852__Mythimna_unipuncta_granulovirus_B__2169746__D446-540

D3 high residues 561-676

PDB

D4 high residues 686-760

PDB

D5 medium residues 11-118

PDB

Domain cluster: rep: VEF__YP_008378473__Choristoneura_rosaceana_nucleopolyhedrovirus__58094__D1-112

D6 medium residues 119-190_206-266

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4fcaA02	3.40.390.80	Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Peptidase M60, enhancin-like domain 2	0.86	76.0	7.56e-01	92.5%	100.0%
1h19A02	3.30.2010.30	Alpha Beta › 2-Layer Sandwich › Zincin-like ›	0.71	51.0	5.81e-01	79.7%	100.0%
4wz9A02	1.10.390.10	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2	0.69	54.0	4.32e-01	82.0%	85.8%
4ar9A01	3.40.30.160	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Collagenase ColT, N-terminal domain	0.64	50.0	4.96e-01	82.7%	92.3%
2vrkA02	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.53	37.0	2.73e-01	72.2%	98.9%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1945553	2498.1.1.41 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M60	0.84	78.0	5.90e-01	100.0%	80.0%
2898625	2498.1.1.41 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M60	0.82	76.0	5.63e-01	98.5%	46.3%
3860924	2498.1.1.41 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M60	0.81	76.0	5.79e-01	100.0%	48.1%
1952631	2498.1.1.41 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M60	0.80	74.0	5.38e-01	98.5%	70.2%
2704655	2498.1.1.0 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain"	0.75	70.0	4.98e-01	100.0%	78.7%
4332917	2498.1.1.41 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M60	0.75	69.0	5.25e-01	100.0%	47.3%
1952651	2498.1.1.41 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M60	0.75	69.0	4.92e-01	100.0%	78.5%
2392512	2498.1.1.9 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1	0.69	54.0	4.42e-01	82.0%	89.1%
4951792	2498.1.1.9 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1	0.69	54.0	4.36e-01	83.5%	89.4%
3653704	2498.1.1.91 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › TAF2_3rd	0.66	50.0	3.94e-01	78.2%	45.4%
4028152	2498.1.1.9 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1	0.66	52.0	4.20e-01	84.2%	51.0%
5045375	2498.1.1.9 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1	0.65	52.0	4.25e-01	83.5%	86.4%
5063746	2498.1.1.9 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1	0.65	51.0	4.20e-01	81.2%	85.3%
3684941	2498.1.1.0 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain"	0.61	48.0	3.79e-01	82.7%	72.4%
3825919	323.1.1.7 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase	0.52	39.0	3.19e-01	76.7%	61.7%
3929654	2498.1.1.2 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Astacin	0.52	38.0	3.35e-01	78.2%	62.4%
3270921	261.1.1.1 ↗	a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT	0.51	38.0	2.78e-01	78.2%	27.1%
4810434	2007.5.1.8 ↗	a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2	0.51	37.0	3.06e-01	75.9%	85.2%