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very_late_factor_1
Euk-VirNeodiprion_sertifer_nucleopolyhedrovirus
very_late_factor_1__YP_025152__Neodiprion_sertifer_nucleopolyhedrovirus__111874
Identity
- Accession:
- YP_025152 ↗
- Protein ID:
- very_late_factor_1
- Kingdom:
- euk
Quality
82.5
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Gammabaculovirus›
Neodiprion_sertifer_nucleopolyhedrovirus
TaxID: 111874
Cluster
View cluster (138 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-36_48-135
Domain cluster:
rep: VLF-1__YP_006908609__Epinotia_aporema_granulovirus__166056__D7-38_57-138
D2
high
residues 155-336
Domain cluster:
rep: MK448963.1__QBX29522.1__Javan498_0048__00001__D46-231
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00589.28 best | Phage_integrase | 47.1 | 3.30e-12 | 86.3% | 86.6% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aihA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.77 | 60.0 | 6.20e-01 | 100.0% | 86.5% |
| 4a8eA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.76 | 61.0 | 6.21e-01 | 95.1% | 84.9% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.74 | 65.0 | 6.66e-01 | 97.3% | 96.5% |
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.72 | 67.0 | 6.25e-01 | 98.9% | 89.1% |
| 1ae9A00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.72 | 59.0 | 6.11e-01 | 95.1% | 91.8% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.71 | 66.0 | 6.50e-01 | 98.9% | 94.3% |
| 1floC02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.69 | 61.0 | 5.43e-01 | 95.1% | 69.6% |
| 2a3vA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.68 | 64.0 | 6.09e-01 | 99.5% | 95.3% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 22.0 | 3.22e-01 | 71.4% | 87.8% |
| 2p92A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.51 | 22.0 | 2.98e-01 | 91.8% | 74.7% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4183457 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 64.0 | 7.08e-01 | 97.8% | 100.0% |
| 5059725 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 68.0 | 6.86e-01 | 98.9% | 87.8% |
| 4637388 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 64.0 | 6.65e-01 | 98.9% | 88.2% |
| 4475168 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 67.0 | 6.59e-01 | 98.9% | 87.2% |
| 4004483 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 67.0 | 6.65e-01 | 100.0% | 89.5% |
| 3964171 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 63.0 | 6.46e-01 | 98.9% | 91.4% |
| 4181053 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 70.0 | 6.76e-01 | 98.9% | 88.5% |
| 4182686 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 69.0 | 6.76e-01 | 98.9% | 90.8% |
| 5083506 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 66.0 | 6.57e-01 | 98.9% | 91.4% |
| 5013304 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.74 | 45.0 | 5.71e-01 | 76.9% | 100.0% |
| 4928138 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.74 | 66.0 | 6.44e-01 | 94.5% | 96.5% |
| 3271483 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 68.0 | 6.77e-01 | 98.9% | 97.9% |
| 5008464 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 62.0 | 6.17e-01 | 96.7% | 86.5% |
| 5016957 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 66.0 | 6.74e-01 | 97.3% | 99.4% |
| 4007744 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 66.0 | 6.35e-01 | 97.3% | 92.7% |
| 4981966 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 65.0 | 6.30e-01 | 98.9% | 86.5% |
| 5073434 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.71 | 65.0 | 6.26e-01 | 97.3% | 87.5% |
| 3980071 | 101.1.8.9 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Integrase_1 | 0.70 | 63.0 | 6.49e-01 | 98.9% | 99.4% |
| 4998614 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.69 | 63.0 | 6.03e-01 | 96.7% | 89.5% |
| 4960057 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.69 | 49.0 | 5.55e-01 | 79.1% | 95.0% |
| 4101478 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.68 | 52.0 | 5.75e-01 | 79.1% | 98.6% |
| 3397391 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.51 | 24.0 | 3.22e-01 | 78.6% | 84.4% |
| 3710257 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.51 | 23.0 | 3.18e-01 | 73.1% | 85.9% |
| 3513861 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.50 | 23.0 | 3.23e-01 | 80.2% | 92.5% |