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viral_DNA_cleavage_packaging_protein

Euk-Vir

Eptesicus_fuscus_gammaherpesvirus

viral_DNA_cleavage_packaging_protein__YP_009552495__Eptesicus_fuscus_gammaherpesvirus__2035399

Identity

Accession:
YP_009552495 ↗
Protein ID:
viral_DNA_cleavage_packaging_protein
Kingdom:
euk

Quality

70.7 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Eptesicus_fuscus_gammaherpesvirus

TaxID: 2035399

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-141_291-342
PDB
Domain cluster: rep: ORF32__YP_010084395__Retroperitoneal_fibromatosis-associated_herpesvirus__111469__D1-125_229-267
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04559.18 best Herpes_UL17 77.4 1.50e-21 75.1% 28.7%
D2 high residues 347-542
PDB
Domain cluster: rep: DNA_packaging_tegument_protein_UL17__YP_009388533__Common_bottlenose_dolphin_gammaherpesvirus_1_strain_Sarasota__2022783__D344-532
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04559.18 best Herpes_UL17 71.8 7.90e-20 93.9% 32.9%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.65 23.0 3.37e-01 78.1% 67.8%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.63 19.0 2.99e-01 80.6% 63.2%
1s62A00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.56 27.0 3.58e-01 99.5% 84.3%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.56 22.0 3.02e-01 88.8% 68.8%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 32.0 3.90e-01 94.4% 95.2%
6brbD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 24.0 3.38e-01 72.4% 95.4%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 33.0 3.80e-01 95.4% 92.5%
4f0uA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.50 32.0 3.53e-01 99.5% 76.9%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3932524 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.64 21.0 2.94e-01 83.2% 58.0%
3403199 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.63 22.0 2.99e-01 85.7% 57.3%
4467333 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.62 21.0 3.01e-01 83.2% 62.1%
4968205 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.62 20.0 3.05e-01 82.7% 64.4%
3544235 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.62 21.0 3.09e-01 83.2% 65.6%
5051705 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.61 21.0 3.02e-01 83.2% 64.2%
5061905 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.61 20.0 3.26e-01 82.7% 75.0%
5081191 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.61 20.0 3.03e-01 83.2% 65.6%
5067909 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.60 21.0 3.28e-01 83.2% 75.3%
5061904 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.59 20.0 2.94e-01 83.2% 65.6%
3227253 331.9.1.8 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 0.56 23.0 3.23e-01 87.2% 76.8%
4021508 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 22.0 3.07e-01 86.2% 72.0%
3510576 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.55 21.0 3.07e-01 87.8% 76.2%
3942062 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 41.0 4.56e-01 99.5% 100.0%
3407402 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.55 22.0 2.99e-01 91.8% 68.4%
4998500 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.55 22.0 2.91e-01 91.8% 63.8%
3598831 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 21.0 2.84e-01 89.8% 64.0%
3710489 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.54 21.0 2.76e-01 88.3% 60.0%
4964955 223.2.1.63 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.53 35.0 4.10e-01 93.9% 100.0%
3510568 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.52 22.0 2.94e-01 93.4% 72.6%
3696033 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.52 42.0 3.30e-01 85.2% 88.2%
142120 106.1.1.5 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › HisK_N 0.52 31.0 3.42e-01 97.4% 73.2%
3407394 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 22.0 2.85e-01 93.4% 66.7%
4023994 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.51 22.0 3.00e-01 87.2% 73.6%
3506091 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.51 38.0 3.90e-01 76.5% 99.5%
5045767 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 23.0 3.14e-01 85.7% 85.6%
4963528 223.2.1.63 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.50 34.0 3.99e-01 92.9% 100.0%
3494105 221.1.1.64 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N 0.50 22.0 3.27e-01 76.5% 97.5%