viral_DNA_polymerase_processivity_factor

Euk-Vir

Murmansk_poxvirus

viral_DNA_polymerase_processivity_factor__YP_009408319__Murmansk_poxvirus__2025359

Identity

89.7 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Centapoxvirus› Murmansk_poxvirus

TaxID: 2025359

View cluster (29 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-42

PDB

Domain cluster: rep: DNA_polymerase_processivity_factor__YP_009268831__Pteropox_virus__1873698__D4-41

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05941.20 best	Chordopox_A20R	54.9	1.00e-14	100.0%	11.3%

D2 high residues 58-210

PDB

Domain cluster: rep: Salt_Pond_R1_B_H2O_MG_scaffold_1_prodigal-single.1__X__X__00295__D161-347

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05941.20 best	Chordopox_A20R	177.6	5.10e-52	100.0%	46.1%

D3 high residues 215-296

PDB

Domain cluster: rep: DNA_polymerase_processivity_factor__YP_009480649__Sea_otter_poxvirus__1416741__D221-304

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05941.20 best	Chordopox_A20R	97.1	1.50e-27	100.0%	24.4%

D4 high residues 309-425

PDB

Domain cluster: rep: DNA_polymerase_processivity_factor__YP_010085413__Eastern_grey_kangaroopox_virus__2042482__D312-439

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2mmbA00	4.10.640.20	Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 ›	0.55	37.0	3.87e-01	98.3%	74.8%
3bvxA02	1.20.1270.50	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain	0.53	30.0	3.10e-01	72.6%	55.0%
3dcfA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	32.0	3.02e-01	95.7%	50.0%
6baoA03	3.30.450.270	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain	0.51	44.0	4.11e-01	97.4%	96.0%
1bbyA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	25.0	3.04e-01	99.1%	72.5%
3l09A03	3.30.70.2670	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	20.0	2.87e-01	95.7%	83.0%
2etdA00	1.20.1440.20	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain	0.50	36.0	3.39e-01	74.4%	82.3%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2889550	4995.1.1.0 ↗	alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like	0.60	38.0	4.40e-01	90.6%	89.3%
2646	101.1.2.35 ↗	alpha arrays › HTH › HTH › winged helix domain › TFIIF_beta	0.53	25.0	3.10e-01	98.3%	71.0%
4528699	4323.1.1.0 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C	0.52	36.0	3.56e-01	71.8%	90.4%
4940192	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.51	34.0	3.51e-01	74.4%	70.2%
3614763	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.51	34.0	3.40e-01	74.4%	65.8%
3950076	1075.3.1.4 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1+BPD_transp_1_N	0.50	36.0	2.70e-01	74.4%	99.1%
3712081	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.50	33.0	3.41e-01	74.4%	70.0%