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viral_RNA_methyltransferase

Euk-Vir

Fusarium_graminearum_mycotymovirus_1

viral_RNA_methyltransferase__YP_009553720__Fusarium_graminearum_mycotymovirus_1__1809243

Identity

Accession:
YP_009553720 ↗
Protein ID:
viral_RNA_methyltransferase
Kingdom:
euk

Quality

89.5 mean pLDDT

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-50_102-213
PDB
Domain cluster: rep: uncovered_polypeptide_polyprotein__YP_001086452_0-758__Chrysanthemum_virus_B__12165__D72-292
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01660.23 best Vmethyltransf 82.9 3.10e-23 78.1% 37.3%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zw9B01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 55.0 4.25e-01 92.3% 88.4%
4rv9A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 50.0 4.54e-01 87.1% 91.0%
3ou2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 48.0 4.41e-01 87.1% 87.7%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 20.0 3.03e-01 76.1% 83.1%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.52 30.0 3.71e-01 70.3% 95.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4434205 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.65 56.0 4.46e-01 91.6% 85.7%
4102443 2003.1.5.35 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.65 55.0 4.26e-01 91.6% 86.5%
3303379 328.4.1.1 ↗ a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.63 32.0 4.04e-01 75.5% 82.2%
4942516 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.62 52.0 4.51e-01 87.7% 91.7%
5053540 2003.1.5.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.62 51.0 4.51e-01 87.7% 94.6%
3810350 328.4.1.1 ↗ a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.61 32.0 3.72e-01 76.8% 69.1%
3938955 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 19.0 3.55e-01 92.3% 95.6%
4424609 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.60 23.0 3.77e-01 74.2% 100.0%
3281117 2003.1.5.35 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.59 42.0 4.13e-01 72.9% 72.7%
3834748 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.58 23.0 2.88e-01 97.4% 54.7%
4032291 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.53 21.0 3.23e-01 80.0% 87.7%
4978668 1137.2.1.1 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › GckA/TtuD-like domain 2 › GckA/TtuD-like domain 2 › MOFRL 0.52 40.0 3.95e-01 82.6% 95.9%
4425795 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.51 21.0 3.11e-01 79.4% 89.2%
3576128 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 30.0 3.42e-01 92.9% 79.1%
3881117 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 30.0 3.54e-01 96.1% 89.0%
D2 high residues 231-278
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4opmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.63 43.0 2.72e-01 75.0% 18.1%
3bf7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 47.0 3.09e-01 97.9% 50.2%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.37e-01 87.5% 55.0%
2ob9A00 3.30.2220.20 Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like 0.53 36.0 2.90e-01 72.9% 65.4%
1vmiA01 3.40.50.10950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 44.0 3.10e-01 100.0% 84.9%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4672450 210.1.1.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.68 46.0 3.02e-01 93.8% 16.6%
3626003 216.1.1.17 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C 0.67 54.0 4.04e-01 87.5% 75.7%
3359036 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 43.0 3.54e-01 77.1% 37.9%
3751844 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 42.0 3.50e-01 79.2% 37.9%
3257506 101.1.1.333 ↗ alpha arrays › HTH › HTH › Three-helical HTH › ATG29_N 0.60 42.0 3.74e-01 75.0% 48.0%
3208374 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.58 47.0 3.45e-01 93.8% 46.4%
3480819 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.57 44.0 3.24e-01 95.8% 75.2%
3423 148.1.1.14 ↗ alpha arrays › Histone-like › Histone-related › Histone › DUF1931 0.56 40.0 2.97e-01 81.2% 44.6%
5016678 148.1.3.238 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF815 0.55 43.0 3.80e-01 87.5% 92.0%
52205 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.54 40.0 2.98e-01 87.5% 55.4%
5030197 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.52 36.0 2.56e-01 75.0% 68.4%