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viral_capsid_protein_91

Euk-Vir

Neodiprion_sertifer_nucleopolyhedrovirus

viral_capsid_protein_91__YP_025191__Neodiprion_sertifer_nucleopolyhedrovirus__111874

Identity

Accession:
YP_025191 ↗
Protein ID:
viral_capsid_protein_91
Kingdom:
euk

Quality

66.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Gammabaculovirus› Neodiprion_sertifer_nucleopolyhedrovirus

TaxID: 111874

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-99
PDB
Domain cluster: rep: viral_capsid_associated_protein_91__YP_667935__Neodiprion_abietis_NPV__204507__D19-97
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08475.16 best Baculo_VP91_N 66.5 3.70e-18 100.0% 51.6%
D2 medium residues 330-402
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.56 45.0 2.96e-01 90.4% 26.8%
2w86A03 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.53 25.0 3.02e-01 97.3% 64.3%
1xzwA01 2.60.40.380 Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal 0.52 36.0 3.37e-01 74.0% 95.9%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 39.0 2.89e-01 87.7% 33.5%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.67e-01 84.9% 28.5%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 33.0 3.52e-01 89.0% 80.6%
2x7bA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 42.0 3.44e-01 100.0% 67.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3217909 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.71 42.0 4.84e-01 93.2% 87.5%
3938763 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.69 40.0 4.63e-01 89.0% 82.0%
3399340 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.66 42.0 4.58e-01 95.9% 81.0%
5029609 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.55 42.0 2.67e-01 84.9% 44.7%
4933066 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.54 30.0 3.76e-01 95.9% 88.9%
3726307 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 46.0 3.41e-01 97.3% 88.2%
4960621 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 41.0 2.50e-01 84.9% 36.4%
5023504 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 40.0 2.48e-01 84.9% 35.6%
5055415 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 40.0 2.51e-01 84.9% 37.0%
5005193 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 40.0 2.40e-01 83.6% 32.9%
5077254 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 39.0 2.46e-01 83.6% 36.1%
4979416 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 40.0 2.48e-01 84.9% 36.4%
3606980 2484.1.1.300 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Aminotran_1_2 0.52 45.0 3.51e-01 100.0% 70.9%
3602786 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 39.0 2.43e-01 84.9% 34.3%
4992091 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.50 38.0 2.40e-01 86.3% 40.6%
5053147 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.50 38.0 2.33e-01 83.6% 35.0%
D3 medium residues 403-502
PDB
Domain cluster: rep: vp91__YP_009011156__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D402-509
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3391213 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.54 24.0 2.95e-01 82.0% 65.0%
4107664 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.52 30.0 3.66e-01 82.0% 100.0%
3390503 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.52 28.0 3.45e-01 91.0% 83.1%
D4 medium residues 604-679
PDB