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viral_capsid_protein
Euk-VirDiscula_destructiva_virus_1
viral_capsid_protein__NP_116742__Discula_destructiva_virus_1__148880
Identity
- Accession:
- NP_116742 ↗
- Protein ID:
- viral_capsid_protein
- Kingdom:
- euk
Quality
69.2
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Duplopiviricetes›
Durnavirales›
Partitiviridae›
Gammapartitivirus›
Discula_destructiva_virus_1
TaxID: 148880
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 83-215_329-357
Domain cluster:
rep: capsid_protein__YP_009259751__Pseudogymnoascus_destructans_partitivirus-pa__1685502__D62-213_326-352
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20895.3 best | PsV_CP | 125.6 | 4.30e-36 | 84.0% | 32.1% |
D2
high
residues 228-324
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20895.3 best | PsV_CP | 89.5 | 3.80e-25 | 100.0% | 25.0% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4eekA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.67 | 42.0 | 5.00e-01 | 89.7% | 93.9% |
| 7smgD00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.57 | 44.0 | 3.90e-01 | 82.5% | 96.5% |
| 1ks9A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.56 | 47.0 | 4.37e-01 | 96.9% | 72.4% |
| 3iruA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 39.0 | 4.21e-01 | 86.6% | 93.6% |
| 7fciA01 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.53 | 41.0 | 2.98e-01 | 84.5% | 94.5% |
| 3m8jA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.53 | 34.0 | 3.54e-01 | 84.5% | 70.0% |
| 4ceiA05 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.52 | 45.0 | 3.89e-01 | 99.0% | 73.5% |
| 2ew2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 46.0 | 4.15e-01 | 99.0% | 70.1% |
| 2yb1A02 | 1.10.150.650 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.52 | 37.0 | 4.12e-01 | 91.8% | 100.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3792376 | 193.1.1.18 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › DUF2465 | 0.56 | 43.0 | 3.94e-01 | 89.7% | 61.5% |
| 5036841 | 5052.1.1.0 ↗ | alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein | 0.54 | 49.0 | 3.42e-01 | 100.0% | 79.3% |
| 1204325 | 2004.1.1.195 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C | 0.52 | 44.0 | 2.99e-01 | 99.0% | 28.1% |
| 4938388 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.52 | 47.0 | 3.48e-01 | 100.0% | 49.2% |
| 4978775 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.52 | 46.0 | 3.53e-01 | 99.0% | 68.4% |
| 3800925 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.51 | 36.0 | 3.64e-01 | 74.2% | 97.9% |
| 5079753 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.51 | 45.0 | 3.51e-01 | 100.0% | 53.7% |