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viral_inclusion_body_protein

Euk-Vir

Wad_Medani_virus

viral_inclusion_body_protein__YP_009158888__Wad_Medani_virus__40067

Identity

Accession:
YP_009158888 ↗
Protein ID:
viral_inclusion_body_protein
Kingdom:
euk

Quality

77.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-130
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04514.20 best BTV_NS2 139.6 2.70e-40 100.0% 30.5%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 29.0 2.67e-01 100.0% 36.7%
3bn8A00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.50 37.0 3.76e-01 100.0% 75.9%
2bmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 34.0 3.08e-01 70.2% 89.7%
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.50 34.0 3.59e-01 86.8% 76.0%
6jmgB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 34.0 3.08e-01 71.1% 95.4%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1058 703.1.1.1 ↗ beta sandwiches › BTV NS2-like ssRNA-binding domain (N-terminal half of Pfam 04514) › BTV NS2-like ssRNA-binding domain (N-terminal half of Pfam 04514) › BTV NS2-like ssRNA-binding domain (N-terminal half of Pfam 04514) › BTV_NS2 0.93 89.0 7.91e-01 100.0% 74.5%
3282850 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.61 39.0 3.78e-01 100.0% 57.7%
3280098 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.57 36.0 3.87e-01 100.0% 73.0%
4999643 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.55 39.0 3.80e-01 73.7% 73.4%
5050648 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.53 38.0 3.79e-01 100.0% 70.0%
1005471 2.1.1.85 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.52 29.0 3.04e-01 100.0% 55.1%
D2 high residues 291-375
PDB
Domain cluster: rep: single-stranded_RNA-binding_protein__YP_009551618__Guangxi_orbivirus__2306813__D349-434
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04514.20 best BTV_NS2 58.2 1.40e-15 100.0% 21.9%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.55 27.0 3.12e-01 74.1% 62.3%
6j7xA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.55 34.0 2.40e-01 98.8% 18.9%
1jmxA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.50e-01 77.6% 95.2%
4qttB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 38.0 3.11e-01 80.0% 56.6%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 44.0 3.14e-01 100.0% 81.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3379250 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.54 39.0 2.56e-01 77.6% 29.8%
3410270 11.1.1.605 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_9th 0.54 37.0 3.84e-01 71.8% 93.8%
3911207 314.1.1.1 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 0.53 47.0 3.17e-01 100.0% 87.3%
4443872 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.34e-01 76.5% 66.7%
3511681 883.1.1.27 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › DUF7061 0.53 39.0 2.89e-01 78.8% 94.8%
4366330 304.20.1.5 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f 0.53 43.0 3.54e-01 90.6% 82.4%
3178085 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.41e-01 80.0% 77.8%
5041827 2006.1.1.19 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › GLUCM-like_C 0.52 39.0 2.88e-01 85.9% 52.4%
4385498 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.41e-01 80.0% 85.6%
3471584 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.50 37.0 2.37e-01 80.0% 37.9%