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viral_non-structural_protein

Euk-Vir

Milk_vetch_dwarf_virus

viral_non-structural_protein__NP_619763__Milk_vetch_dwarf_virus__67585

Identity

Accession:
NP_619763 ↗
Protein ID:
viral_non-structural_protein
Kingdom:
euk

Quality

82.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-33_90-123
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 45.0 3.57e-01 74.2% 66.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3506141 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 50.0 4.85e-01 95.2% 100.0%
3504009 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 48.0 4.37e-01 96.8% 82.4%
3226161 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 32.0 2.89e-01 91.9% 40.0%
3393434 108.1.1.123 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_EFHB_C 0.56 49.0 4.44e-01 100.0% 80.0%
D2 medium residues 34-89_124-141
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 50.0 4.64e-01 93.2% 58.2%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 48.0 3.99e-01 95.9% 44.6%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 51.0 4.19e-01 93.2% 48.9%
4ccvA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 56.0 4.84e-01 98.6% 69.6%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 49.0 4.10e-01 97.3% 48.1%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 54.0 4.39e-01 93.2% 87.9%
2ckfB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 52.0 4.01e-01 98.6% 40.0%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.62 54.0 4.41e-01 95.9% 84.1%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 45.0 3.91e-01 89.2% 49.6%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.61 53.0 4.13e-01 100.0% 45.8%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 51.0 4.35e-01 91.9% 86.7%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.61 51.0 4.15e-01 90.5% 85.2%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 49.0 4.09e-01 95.9% 51.2%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 53.0 4.35e-01 95.9% 83.5%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.60 51.0 4.10e-01 93.2% 81.2%
4pswB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 48.0 3.13e-01 97.3% 18.0%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 49.0 4.13e-01 94.6% 53.7%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 54.0 4.17e-01 100.0% 86.4%
4jf8A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.60 49.0 3.97e-01 90.5% 81.2%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.60 53.0 3.80e-01 100.0% 54.6%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 53.0 4.34e-01 100.0% 82.7%
1pp0B00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.59 53.0 3.89e-01 100.0% 95.9%
3mg1B02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 51.0 4.27e-01 95.9% 96.8%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 51.0 3.41e-01 97.3% 33.3%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 51.0 4.22e-01 97.3% 82.0%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 52.0 4.11e-01 98.6% 76.4%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 50.0 4.02e-01 97.3% 82.4%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 4.00e-01 100.0% 52.3%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 46.0 3.96e-01 86.5% 96.6%
4x2oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 50.0 3.86e-01 100.0% 47.5%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.58 44.0 3.38e-01 100.0% 34.6%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 3.92e-01 100.0% 48.8%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 4.11e-01 98.6% 81.3%
1of5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 3.92e-01 97.3% 74.7%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.57 50.0 3.95e-01 100.0% 48.0%
4nzrM02 2.160.20.180 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.55 44.0 3.42e-01 91.9% 48.4%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 45.0 4.22e-01 90.5% 83.5%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 47.0 3.23e-01 98.6% 34.2%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.54 41.0 3.57e-01 82.4% 66.4%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 45.0 3.45e-01 95.9% 88.3%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.85e-01 95.9% 91.0%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 43.0 3.94e-01 90.5% 80.8%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 46.0 3.61e-01 97.3% 82.1%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 45.0 3.67e-01 98.6% 92.5%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.51 42.0 3.83e-01 93.2% 82.4%
4owwB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 42.0 3.77e-01 93.2% 82.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053967 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 54.0 5.14e-01 93.2% 70.6%
3227176 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.69 52.0 4.29e-01 93.2% 46.1%
3749122 5.1.3.176 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › APEH_N 0.67 52.0 3.30e-01 95.9% 16.0%
4608992 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.66 54.0 4.19e-01 97.3% 41.1%
3971296 243.1.1.5 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Tim44 0.66 52.0 4.30e-01 93.2% 48.1%
4168380 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.66 50.0 4.16e-01 94.6% 46.2%
3962486 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.66 54.0 4.18e-01 87.8% 67.5%
3570251 5.1.4.288 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.65 51.0 3.18e-01 95.9% 14.4%
5032842 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 47.0 4.04e-01 75.7% 74.8%
4228716 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.65 55.0 4.52e-01 93.2% 89.6%
3789198 10.10.1.2 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Flo11 0.65 50.0 3.80e-01 81.1% 52.7%
3407245 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.64 51.0 4.34e-01 87.8% 94.4%
3934735 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 50.0 4.56e-01 94.6% 63.0%
3284315 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.64 56.0 4.67e-01 95.9% 86.4%
4955220 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 46.0 4.29e-01 75.7% 98.9%
3740523 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.63 54.0 4.14e-01 97.3% 41.8%
4960640 304.165.1.4 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › HVO_2525_N 0.62 45.0 3.59e-01 75.7% 64.1%
1146698 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.62 54.0 4.39e-01 95.9% 84.3%
3483729 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 51.0 4.31e-01 89.2% 95.8%
3447011 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.62 49.0 3.85e-01 93.2% 39.4%
3418966 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.62 54.0 3.25e-01 95.9% 16.3%
3941713 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.62 51.0 4.14e-01 90.5% 53.6%
3515333 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 50.0 4.75e-01 91.9% 75.6%
3756624 5.1.4.55 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ELYS-bb 0.61 52.0 3.16e-01 100.0% 40.0%
6405 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.61 53.0 4.35e-01 95.9% 84.1%
4193401 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.61 51.0 4.50e-01 93.2% 84.5%
3280539 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.60 53.0 4.37e-01 95.9% 84.6%
3931232 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 47.0 3.98e-01 86.5% 59.2%
3858387 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 52.0 2.99e-01 98.6% 94.1%
3635512 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 47.0 3.71e-01 86.5% 83.2%
3698353 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 50.0 4.17e-01 91.9% 85.6%
4074364 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 51.0 4.24e-01 95.9% 73.1%
3242425 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.59 52.0 3.85e-01 98.6% 41.6%
3692272 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.59 46.0 3.71e-01 86.5% 82.0%
3818687 243.1.1.49 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 0.58 52.0 4.17e-01 100.0% 86.2%
4938590 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 4.07e-01 95.9% 64.2%
3427427 243.3.1.47 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF7074 0.58 46.0 4.36e-01 87.8% 74.4%
1108903 3667.1.1.1 a+b two layers › LEE-encoded effector EspG C-terminal domain-related › LEE-encoded effector EspG C-terminal domain-related › LEE-encoded effector EspG C-terminal domain-related › EspG 0.57 51.0 3.54e-01 100.0% 30.2%
3285952 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.57 49.0 4.14e-01 98.6% 86.2%
3515197 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.57 48.0 3.70e-01 100.0% 41.2%
4333285 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.57 49.0 3.51e-01 100.0% 46.3%
3940802 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 49.0 4.41e-01 97.3% 83.8%
3253922 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 49.0 3.37e-01 98.6% 88.2%
3732294 243.1.1.78 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26534 0.56 48.0 3.82e-01 98.6% 81.8%
3817109 243.3.1.26 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › protein_MS5 0.55 44.0 3.57e-01 95.9% 43.2%
3597660 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 48.0 3.02e-01 100.0% 22.5%
4886881 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 47.0 3.89e-01 100.0% 81.2%
4280513 222.2.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase › FAS1_thioest_ins 0.54 46.0 4.09e-01 98.6% 84.5%
4608460 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.52 44.0 3.44e-01 97.3% 80.6%
4173092 222.2.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase › FAS1_thioest_ins 0.51 38.0 3.43e-01 81.1% 82.9%