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viral_polypeptide_VP4
Euk-VirDiatraea_saccharalis_densovirus
viral_polypeptide_VP4__NP_046818__Diatraea_saccharalis_densovirus__72003
Identity
- Accession:
- NP_046818 ↗
- Protein ID:
- viral_polypeptide_VP4
- Kingdom:
- euk
Quality
61.5
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Diatraea_saccharalis_densovirus
TaxID: 72003
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 35-143_249-273_312-405
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02336.22 best | Denso_VP4 | 47.1 | 3.30e-12 | 33.8% | 22.3% |
| PF02336.22 | Denso_VP4 | 66.0 | 5.70e-18 | 25.4% | 20.1% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c8dA00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.72 | 65.0 | 4.80e-01 | 95.2% | 88.3% |
| 2pn5A08 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 26.0 | 3.80e-01 | 93.4% | 69.4% |
| 2g8gA00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.71 | 65.0 | 4.83e-01 | 95.6% | 88.0% |
| 1s58A00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.70 | 64.0 | 4.78e-01 | 95.6% | 86.8% |
| 5ikuA01 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 25.0 | 3.67e-01 | 92.5% | 75.0% |
| 1stmA00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.65 | 40.0 | 5.00e-01 | 95.2% | 97.9% |
| 1xruA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.65 | 28.0 | 3.37e-01 | 93.4% | 58.0% |
| 2qjvA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 30.0 | 3.67e-01 | 91.7% | 67.3% |
| 4indA03 | 2.60.120.1330 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 33.0 | 4.50e-01 | 92.1% | 95.8% |
| 5j09A00 | 2.60.120.950 | Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein | 0.58 | 43.0 | 4.85e-01 | 92.5% | 100.0% |
| 1cov100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 45.0 | 4.30e-01 | 94.3% | 68.8% |
| 6sk6A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 46.0 | 4.36e-01 | 94.7% | 69.6% |
| 1f2nC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 44.0 | 4.55e-01 | 95.6% | 84.9% |
| 2df7A02 | 2.60.120.660 | Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus | 0.56 | 35.0 | 4.36e-01 | 95.6% | 100.0% |
| 3jciA00 | 2.60.120.950 | Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein | 0.56 | 44.0 | 4.78e-01 | 94.7% | 96.8% |
| 1anuA00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 31.0 | 3.92e-01 | 91.7% | 89.9% |
| 1ng0C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 45.0 | 4.67e-01 | 94.7% | 89.0% |
| 4en2A02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.55 | 26.0 | 3.63e-01 | 91.7% | 93.3% |
| 4rs5A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 42.0 | 4.35e-01 | 95.2% | 82.4% |
| 2zahA02 | 2.60.40.4030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 28.0 | 3.78e-01 | 93.0% | 94.5% |
| 1wcdJ01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 44.0 | 4.09e-01 | 94.7% | 73.0% |
| 1novA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 47.0 | 4.16e-01 | 96.1% | 79.6% |
| 3qs2A00 | 2.60.40.3290 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial protein EcpA | 0.50 | 37.0 | 4.19e-01 | 93.4% | 100.0% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1197 | 10.2.1.28 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 | 0.88 | 85.0 | 6.71e-01 | 99.1% | 92.0% |
| 3106452 | 10.2.1.28 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 | 0.85 | 81.0 | 6.45e-01 | 99.1% | 91.8% |
| 1112407 | 10.2.1.28 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 | 0.83 | 79.0 | 6.49e-01 | 99.1% | 93.1% |
| 1034414 | 10.2.1.16 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_NS1 | 0.77 | 74.0 | 5.87e-01 | 99.1% | 88.6% |
| 2142463 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.73 | 66.0 | 4.91e-01 | 95.2% | 88.0% |
| 2990572 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.72 | 65.0 | 4.84e-01 | 95.6% | 88.3% |
| 4884619 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.72 | 65.0 | 4.79e-01 | 95.6% | 87.3% |
| 2644354 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.71 | 65.0 | 4.82e-01 | 95.6% | 88.4% |
| 1195 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.70 | 64.0 | 4.78e-01 | 95.6% | 86.8% |
| 178766 | 10.2.1.53 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › IHHNV_capsid | 0.65 | 60.0 | 5.45e-01 | 98.2% | 90.6% |
| 3473996 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.62 | 56.0 | 5.19e-01 | 95.2% | 93.6% |
| 3491153 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 30.0 | 3.58e-01 | 95.6% | 67.7% |
| 3585284 | 10.40.1.1 ↗ | beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR | 0.59 | 32.0 | 3.45e-01 | 88.6% | 58.9% |
| 4982351 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.58 | 31.0 | 4.28e-01 | 92.1% | 100.0% |
| 3508760 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.55 | 29.0 | 3.87e-01 | 85.5% | 94.2% |
| 3569893 | 11.2.1.50 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_GDE1 | 0.55 | 29.0 | 3.27e-01 | 85.5% | 62.9% |
| 4091603 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.55 | 28.0 | 3.00e-01 | 95.6% | 53.2% |
| 5039338 | 10.1.2.183 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC | 0.55 | 29.0 | 3.97e-01 | 89.5% | 100.0% |
| 3491699 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 34.0 | 4.05e-01 | 92.5% | 91.6% |
| 5033265 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 34.0 | 4.01e-01 | 93.4% | 94.4% |
| 3794791 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.51 | 33.0 | 3.89e-01 | 95.2% | 91.5% |
| 3543937 | 11.1.1.297 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 | 0.50 | 29.0 | 3.58e-01 | 92.5% | 88.3% |