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viral_replication-associated_protein
Euk-VirMilk_vetch_dwarf_C2_alphasatellite
viral_replication-associated_protein__NP_619760__Milk_vetch_dwarf_C2_alphasatellite__1455653
Identity
- Accession:
- NP_619760 ↗
- Protein ID:
- viral_replication-associated_protein
- Kingdom:
- euk
Quality
83.8
mean pLDDT
Cluster
View cluster (111 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 149-281
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00910.29 best | RNA_helicase | 54.0 | 2.90e-14 | 72.2% | 100.0% |
D2
medium
residues 2-97
Domain cluster:
rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02407.23 best | Viral_Rep | 109.6 | 1.00e-31 | 91.7% | 98.8% |
D3
medium
residues 106-139
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ejrA01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.69 | 58.0 | 3.63e-01 | 100.0% | 33.8% |
| 4wpzA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.68 | 53.0 | 3.04e-01 | 97.1% | 7.8% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.66 | 50.0 | 3.80e-01 | 85.3% | 71.8% |
| 3ilxA02 | 1.10.287.2170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 48.0 | 4.50e-01 | 85.3% | 63.6% |
| 4c0aA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.57 | 46.0 | 3.62e-01 | 100.0% | 58.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5013708 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.85 | 58.0 | 4.02e-01 | 73.5% | 24.5% |
| 3259397 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.81 | 59.0 | 4.01e-01 | 88.2% | 23.5% |
| 3561266 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.74 | 55.0 | 5.28e-01 | 85.3% | 70.0% |