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virion_associated_protein

Euk-Vir

Banana_streak_UI_virus

virion_associated_protein__YP_004442826__Banana_streak_UI_virus__1016855

Identity

Accession:
YP_004442826 ↗
Protein ID:
virion_associated_protein
Kingdom:
euk

Quality

73.6 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Badnavirus› Banana_streak_UI_virus

TaxID: 1016855

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-87
PDB
Domain cluster: rep: ORFII__YP_233106__Banana_streak_GF_virus__328670__D1-69
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.81 39.0 3.43e-01 80.5% 35.1%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.80 39.0 3.49e-01 81.7% 35.7%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.72 52.0 4.54e-01 91.5% 50.8%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.71 57.0 4.50e-01 97.6% 42.9%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.70 50.0 5.02e-01 87.8% 73.2%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.70 50.0 5.39e-01 89.0% 85.9%
1o5hA00 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.67 49.0 3.64e-01 76.8% 54.0%
3lnrA00 1.20.120.1530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 48.0 3.77e-01 76.8% 39.4%
3a8tA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.63 51.0 4.62e-01 86.6% 82.9%
1ivhA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 41.0 3.42e-01 75.6% 40.4%
4akgA11 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.60 47.0 3.30e-01 85.4% 31.9%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.57 43.0 3.51e-01 81.7% 42.6%
3n00A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.56 40.0 3.05e-01 73.2% 64.1%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3530636 192.29.1.103 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TADA2A-like_3rd 0.80 50.0 4.93e-01 76.8% 61.2%
4014242 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.77 50.0 3.39e-01 70.7% 20.4%
5066732 3646.1.1.1 ↗ alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.75 42.0 2.95e-01 81.7% 19.6%
4942757 606.1.1.1 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop 0.73 51.0 4.65e-01 72.0% 81.0%
3610933 150.1.1.96 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PEX11 0.70 49.0 3.45e-01 79.3% 25.7%
3938687 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.69 52.0 4.15e-01 79.3% 41.3%
3600712 192.5.1.0 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.69 48.0 4.78e-01 78.0% 69.4%
3899600 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.68 49.0 3.40e-01 74.4% 92.7%
3485540 603.1.1.1 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.68 57.0 4.43e-01 98.8% 42.9%
3640760 3291.1.1.17 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF202 0.68 51.0 4.60e-01 79.3% 59.1%
4639996 150.7.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › PE 0.67 50.0 4.83e-01 91.5% 71.1%
3600606 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.66 56.0 4.30e-01 100.0% 42.3%
3517172 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.66 51.0 3.35e-01 82.9% 41.5%
4593075 5059.1.1.9 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Sugar_transport 0.65 46.0 3.09e-01 73.2% 55.8%
3600055 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.65 50.0 4.37e-01 82.9% 79.2%
3839810 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.64 53.0 4.42e-01 89.0% 79.3%
4318194 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.64 43.0 3.86e-01 79.3% 49.6%
3929139 5001.1.1.83 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_7 0.62 51.0 3.36e-01 89.0% 86.2%
4114828 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.61 41.0 3.73e-01 82.9% 50.9%
4504660 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.60 44.0 4.00e-01 79.3% 75.7%
4164698 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.59 44.0 3.99e-01 79.3% 78.2%
4039339 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 52.0 4.55e-01 100.0% 66.4%
4311026 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.58 44.0 3.79e-01 80.5% 76.0%
4215070 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.56 37.0 3.53e-01 79.3% 56.0%
3575045 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.55 49.0 3.25e-01 100.0% 29.0%
4399355 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.55 37.0 3.26e-01 79.3% 45.6%
4304175 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.54 37.0 3.01e-01 72.0% 39.3%