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virion_core_protein

Euk-Vir

Pteropox_virus

virion_core_protein__YP_009268799__Pteropox_virus__1873698

Identity

Accession:
YP_009268799 ↗
Protein ID:
virion_core_protein
Kingdom:
euk

Quality

88.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Pteropopoxvirus› Pteropox_virus

TaxID: 1873698

Cluster

View cluster (26 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-227
PDB
Domain cluster: rep: virion_core_protein__YP_009408286__Murmansk_poxvirus__2025359__D2-197
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04580.19 best Pox_D3 103.1 2.80e-29 99.6% 83.1%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ry6A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.63 59.0 5.19e-01 99.6% 99.4%
3nwnA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.58 55.0 4.90e-01 99.6% 98.7%
3kenA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.58 54.0 4.70e-01 99.6% 96.4%
2ee3A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 26.0 3.71e-01 73.1% 88.0%
3dgcS01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 26.0 3.67e-01 89.4% 96.1%
2jjdF02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 40.0 3.85e-01 100.0% 70.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3397878 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.64 60.0 4.86e-01 99.6% 96.0%
3719525 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.63 59.0 4.42e-01 99.1% 66.0%
3599377 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.63 59.0 4.90e-01 99.6% 93.2%
4291975 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.63 59.0 4.84e-01 99.6% 89.5%
3717377 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.63 59.0 4.43e-01 99.1% 66.5%
4055857 11.1.1.1110 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26306 0.62 30.0 4.33e-01 72.2% 99.0%
4681189 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.61 57.0 4.65e-01 99.6% 89.4%
4301893 3739.1.1.1 ↗ beta sandwiches › TraO N-terminal domain › TraO N-terminal domain › TraO N-terminal domain › CagX 0.60 29.0 3.90e-01 93.8% 85.0%
3406934 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.59 55.0 4.84e-01 99.6% 95.2%
3406064 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 54.0 4.94e-01 99.6% 94.9%
5046075 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 24.0 3.69e-01 91.6% 94.7%
5052063 2011.2.1.1 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.56 31.0 3.40e-01 93.0% 64.7%
3597539 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 52.0 4.41e-01 98.7% 82.2%
4550624 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.56 24.0 3.68e-01 72.7% 96.8%
3601845 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 50.0 4.97e-01 99.6% 98.7%
3586444 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.53 27.0 3.60e-01 83.7% 91.7%
3940062 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 41.0 3.63e-01 100.0% 57.8%
4946305 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 25.0 3.51e-01 91.2% 96.2%
4655289 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 25.0 3.61e-01 81.5% 100.0%
3415160 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.51 28.0 3.57e-01 91.2% 93.6%
3940554 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.50 42.0 3.86e-01 100.0% 69.0%
D2 medium residues 229-263
PDB
Domain cluster: rep: virion_core_protein__YP_009177064__Turkeypox_virus__336486__D235-270
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04580.19 best Pox_D3 33.4 5.30e-08 100.0% 12.9%