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virion_core_proteinase
Euk-VirPigeonpox_virus
virion_core_proteinase__YP_009046316__Pigeonpox_virus__10264
Identity
- Accession:
- YP_009046316 ↗
- Protein ID:
- virion_core_proteinase
- Kingdom:
- euk
Quality
86.6
mean pLDDT
Cluster
View cluster (28 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 167-359
Domain cluster:
rep: virion_core_cysteine_protease__YP_009268768__Pteropox_virus__1873698__D177-370
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03290.19 best | Peptidase_C57 | 306.3 | 4.60e-91 | 100.0% | 45.6% |
D2
medium
residues 45-119
Domain cluster:
rep: virion_core_proteinase__YP_784260__Nile_crocodilepox_virus__1285600__D45-120
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03290.19 best | Peptidase_C57 | 85.9 | 3.50e-24 | 100.0% | 18.4% |
D3
medium
residues 363-421
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03290.19 best | Peptidase_C57 | 67.3 | 1.60e-18 | 100.0% | 13.9% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4akgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.72 | 57.0 | 3.60e-01 | 84.7% | 18.1% |
| 1sg6A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.69 | 51.0 | 3.54e-01 | 84.7% | 23.9% |
| 3j27B00 | 1.10.8.970 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Flavivirus envelope glycoprotein M-like | 0.64 | 40.0 | 3.76e-01 | 91.5% | 51.4% |
| 3f1iS00 | 1.20.5.1940 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 55.0 | 5.09e-01 | 100.0% | 76.6% |
| 6nyyE01 | 1.20.58.760 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 | 0.60 | 52.0 | 3.74e-01 | 100.0% | 32.9% |
| 1ntcA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 38.0 | 3.34e-01 | 79.7% | 45.1% |
| 7eqiA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 40.0 | 2.96e-01 | 81.4% | 37.3% |
| 4onsB00 | 6.10.250.2780 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.53 | 41.0 | 4.25e-01 | 86.4% | 92.9% |
| 1d8cA02 | 2.170.170.11 | Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain | 0.51 | 39.0 | 3.02e-01 | 81.4% | 52.3% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3704098 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.68 | 60.0 | 4.25e-01 | 96.6% | 35.3% |
| 4625331 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.67 | 60.0 | 4.05e-01 | 96.6% | 29.0% |
| 3611289 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.66 | 57.0 | 4.21e-01 | 96.6% | 38.6% |
| 3703149 | 109.23.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 | 0.63 | 57.0 | 3.91e-01 | 98.3% | 32.4% |
| 4943088 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.63 | 56.0 | 4.11e-01 | 98.3% | 38.0% |
| 3681702 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 48.0 | 3.09e-01 | 84.7% | 88.6% |
| 3649513 | 109.4.1.330 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BIG2_C | 0.58 | 51.0 | 3.10e-01 | 96.6% | 31.7% |
| 3410970 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.56 | 47.0 | 3.16e-01 | 94.9% | 47.2% |
| 5029022 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.55 | 44.0 | 2.85e-01 | 86.4% | 96.2% |
| 3520437 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.52 | 43.0 | 3.17e-01 | 100.0% | 47.9% |