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virion_membrane_glycoprotein_B

Euk-Vir

Hawaiian_green_turtle_herpesvirus

virion_membrane_glycoprotein_B__YP_009207088__Hawaiian_green_turtle_herpesvirus__70564

Identity

Accession:
YP_009207088 ↗
Protein ID:
virion_membrane_glycoprotein_B
Kingdom:
euk

Quality

68.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Scutavirus› Hawaiian_green_turtle_herpesvirus

TaxID: 70564

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 87-208
PDB
Domain cluster: rep: envelope_glycoprotein_B__YP_009344884__Murine_roseolovirus__1940555__D81-138_150-207
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17416.9 best Glycoprot_B_PH1 66.4 4.20e-18 100.0% 57.1%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hgsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.65 34.0 3.63e-01 97.5% 55.9%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 30.0 3.15e-01 98.4% 52.8%
1tnrA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.55 34.0 3.29e-01 97.5% 52.1%
1dg6A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 32.0 2.99e-01 99.2% 47.0%
3g1nA02 3.30.2160.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.51 29.0 3.50e-01 91.8% 86.3%
1akpA00 2.60.40.230 Mainly Beta › Sandwich › Immunoglobulin-like › Neocarzinostatin-like 0.50 32.0 3.34e-01 97.5% 68.4%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.50 34.0 3.09e-01 95.9% 50.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1688016 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.92 85.0 6.89e-01 100.0% 56.2%
2530507 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.89 85.0 6.73e-01 100.0% 54.7%
4877472 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.83 68.0 6.32e-01 86.1% 70.0%
3583154 220.3.1.0 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins 0.80 60.0 5.70e-01 99.2% 67.1%
5050550 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 38.0 3.85e-01 95.9% 55.0%
3411669 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 38.0 3.98e-01 95.1% 61.8%
4938639 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 39.0 4.09e-01 91.8% 73.7%
5074083 11.1.1.91 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Spo0M 0.57 36.0 3.43e-01 95.9% 52.4%
2124211 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.57 46.0 4.22e-01 95.9% 66.3%
3408652 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 37.0 3.42e-01 81.1% 50.6%
185186 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.57 48.0 4.40e-01 98.4% 70.9%
5030450 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 33.0 3.10e-01 96.7% 47.6%
5014950 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 34.0 3.17e-01 96.7% 49.7%
3541221 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.54 35.0 4.12e-01 93.4% 94.1%
2464208 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.54 47.0 4.31e-01 95.9% 78.8%
2124201 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.53 47.0 4.33e-01 96.7% 81.0%
3927415 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 31.0 3.36e-01 94.3% 69.2%
1097207 10.9.1.2 ↗ beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › Haemocyan_bet_s 0.51 30.0 3.18e-01 88.5% 63.1%
5039895 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 33.0 3.35e-01 95.9% 66.7%
4021064 10.9.1.0 ↗ beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin 0.50 32.0 3.47e-01 88.5% 74.3%
D2 medium residues 504-601
PDB
Domain cluster: rep: envelope_glycoprotein_B__YP_009342376__Spheniscid_alphaherpesvirus_1__2560777__D566-653
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00606.24 best Glycoprotein_B 75.3 7.30e-21 100.0% 40.5%