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virion_protein_G52
Euk-VirEquid_gammaherpesvirus_2
virion_protein_G52__NP_042649__Equid_gammaherpesvirus_2__12657
Identity
- Accession:
- NP_042649 ↗
- Protein ID:
- virion_protein_G52
- Kingdom:
- euk
Quality
75.3
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Percavirus›
Equid_gammaherpesvirus_2
TaxID: 12657
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 49-100
Domain cluster:
rep: ORF52__YP_009173931__Felis_catus_gammaherpesvirus_1__1452540__D51-103
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05812.18 best | Herpes_BLRF2 | 63.4 | 3.20e-17 | 100.0% | 42.9% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oa5A01 | 1.10.3390.10 | Mainly Alpha › Orthogonal Bundle › YejL-like › YejL-like | 0.96 | 87.0 | 7.46e-01 | 96.2% | 64.9% |
| 2ql2C00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.75 | 57.0 | 5.54e-01 | 94.2% | 72.4% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 60.0 | 4.24e-01 | 90.4% | 60.0% |
| 4hkaA02 | 1.10.287.3810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 50.0 | 5.07e-01 | 92.3% | 70.6% |
| 3mzoB00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.70 | 54.0 | 3.56e-01 | 82.7% | 72.4% |
| 7cj3A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.70 | 57.0 | 3.60e-01 | 90.4% | 86.0% |
| 3e98B00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.67 | 58.0 | 4.08e-01 | 100.0% | 32.2% |
| 3nf4A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.63 | 44.0 | 3.47e-01 | 76.9% | 33.6% |
| 1yqyA01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.60 | 47.0 | 3.15e-01 | 86.5% | 56.4% |
| 1f68A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.59 | 41.0 | 3.32e-01 | 75.0% | 87.4% |
| 4bgpA01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.53 | 42.0 | 3.19e-01 | 86.5% | 52.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7704 | 4302.1.1.2 ↗ | a+b duplicates or obligate multimers › BLRF2-like › BLRF2-like › BLRF2-like › Herpes_BLRF2 | 0.96 | 90.0 | 7.40e-01 | 100.0% | 59.8% |
| 3802185 | 192.8.1.359 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF641 | 0.73 | 56.0 | 5.15e-01 | 96.2% | 62.9% |
| 4506168 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.72 | 60.0 | 4.53e-01 | 92.3% | 45.6% |
| 4948369 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.68 | 59.0 | 4.31e-01 | 96.2% | 36.2% |
| 3447097 | 603.1.1.99 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 | 0.67 | 58.0 | 4.57e-01 | 98.1% | 47.3% |
| 5081021 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.66 | 55.0 | 4.03e-01 | 96.2% | 35.2% |