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virion_protein_V67
Euk-VirCanid_alphaherpesvirus_1
virion_protein_V67__YP_009252300__Canid_alphaherpesvirus_1__170325
Identity
- Accession:
- YP_009252300 ↗
- Protein ID:
- virion_protein_V67
- Kingdom:
- euk
Quality
70.6
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Canid_alphaherpesvirus_1
TaxID: 170325
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-45_69-178
Domain cluster:
rep: virion_protein_V67__YP_002333558__Equid_alphaherpesvirus_9__55744__D61-96_113-150_206-238
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06307.18 best | Herpes_IR6 | 162.7 | 1.30e-47 | 82.2% | 52.3% |
| PF06307.18 | Herpes_IR6 | 42.0 | 1.10e-10 | 19.3% | 11.7% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q18X01 | 3.10.330.40 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.57 | 29.0 | 3.82e-01 | 81.5% | 92.9% |
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.56 | 20.0 | 2.95e-01 | 84.4% | 71.9% |
| 2hf1A01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.54 | 23.0 | 3.39e-01 | 73.3% | 94.5% |