virion_protein

Euk-Vir

Human_betaherpesvirus_6B

virion_protein__NP_050217__Human_betaherpesvirus_6B__32604

Identity

76.7 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Roseolovirus› Human_betaherpesvirus_6B

TaxID: 32604

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-28_58-219_397-426

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_009176905__Testudinid_alphaherpesvirus_3__2560801__D32-61_81-232_316-336_452-482

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	100.3	1.90e-28	70.6%	24.5%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1vw4L01	3.90.1030.10	Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17	0.54	24.0	2.94e-01	83.8%	60.7%
2o7gA00	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.51	21.0	2.95e-01	73.0%	79.5%

D2 medium residues 220-290

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_004940225__Saimiriine_betaherpesvirus_4__1535247__D262-319

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	26.0	6.20e-06	70.4%	7.4%

D3 medium residues 291-396

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_010084958__Beluga_whale_alphaherpesvirus_1__1434720__D379-511

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	58.2	1.10e-15	100.0%	14.7%

D4 medium residues 427-484

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_007969812__Elephantid_betaherpesvirus_1__146015__D399-449

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	40.2	3.20e-10	100.0%	10.0%