←Back to structures
virion_protein
Euk-VirPigeonpox_virus
virion_protein__YP_009046378__Pigeonpox_virus__10264
Identity
- Accession:
- YP_009046378 ↗
- Protein ID:
- virion_protein
- Kingdom:
- euk
Quality
81.8
mean pLDDT
Cluster
View cluster (28 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-54
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6jx5A01 | 3.30.2160.10 | Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain | 0.75 | 33.0 | 2.95e-01 | 85.2% | 29.3% |
| 4hqsA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.67 | 40.0 | 2.99e-01 | 92.6% | 23.7% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 49.0 | 3.95e-01 | 88.9% | 71.9% |
| 2qdfA03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.57 | 40.0 | 3.57e-01 | 74.1% | 93.5% |
| 2w00A02 | 3.90.640.50 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.56 | 39.0 | 3.64e-01 | 75.9% | 97.3% |
| 2qrdE01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.52 | 36.0 | 2.58e-01 | 74.1% | 22.8% |
| 1mppA01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.52 | 36.0 | 2.55e-01 | 74.1% | 92.8% |
| 3ddjA01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.50 | 37.0 | 2.79e-01 | 79.6% | 80.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4010835 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.71 | 50.0 | 5.37e-01 | 94.4% | 88.9% |
| 3684131 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.59 | 36.0 | 3.14e-01 | 92.6% | 36.5% |
| 5079424 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.59 | 42.0 | 3.87e-01 | 85.2% | 57.3% |
| 3241684 | 2485.1.1.2 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GSHPx | 0.55 | 46.0 | 3.58e-01 | 98.1% | 41.6% |
| 3949767 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.55 | 40.0 | 2.67e-01 | 85.2% | 35.3% |
| 3491073 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 38.0 | 2.49e-01 | 87.0% | 70.9% |
| 3987246 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.51 | 42.0 | 2.72e-01 | 96.3% | 58.5% |
| 4043600 | 327.18.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A | 0.51 | 39.0 | 3.57e-01 | 96.3% | 69.4% |
| 3839655 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.51 | 38.0 | 2.55e-01 | 87.0% | 40.0% |
| 4537134 | 2004.1.1.123 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_RecD | 0.50 | 44.0 | 2.95e-01 | 100.0% | 47.6% |
D2
medium
residues 55-125
Domain cluster:
rep: virion_protein__YP_009448067__Flamingopox_virus_FGPVKD09__2059380__D49-126
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04701.20 best | Pox_D2 | 59.4 | 6.70e-16 | 100.0% | 53.6% |