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virion_transmembrane_glycoprotein

Euk-Vir

Hapavirus_wongabel

virion_transmembrane_glycoprotein__YP_002333278__Hapavirus_wongabel__1972626

Identity

Accession:
YP_002333278 ↗
Protein ID:
virion_transmembrane_glycoprotein
Kingdom:
euk

Quality

62.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 101-111_239-317
PDB
Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.72 61.0 6.06e-01 100.0% 87.4%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.68 56.0 5.57e-01 100.0% 88.2%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 51.0 5.20e-01 100.0% 94.3%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 56.0 5.15e-01 100.0% 80.5%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 56.0 4.87e-01 100.0% 70.5%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 5.01e-01 100.0% 89.8%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 4.79e-01 100.0% 78.0%
1bakA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 4.70e-01 100.0% 73.1%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 53.0 4.71e-01 100.0% 72.9%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 52.0 4.92e-01 100.0% 82.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 35.0 3.99e-01 86.7% 82.1%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 36.0 4.01e-01 100.0% 84.8%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 50.0 4.38e-01 100.0% 82.9%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 36.0 4.05e-01 87.8% 86.6%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.57 49.0 4.56e-01 95.6% 85.8%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 4.03e-01 100.0% 68.7%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 33.0 3.18e-01 95.6% 56.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3604468 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 50.0 5.26e-01 100.0% 91.3%
5022892 220.1.1.82 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.64 39.0 4.76e-01 74.4% 100.0%
3273591 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 52.0 4.62e-01 100.0% 62.3%
3933119 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 56.0 4.95e-01 100.0% 87.7%
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.60 35.0 4.24e-01 94.4% 92.7%
3388895 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.59 49.0 4.64e-01 100.0% 74.5%
3393555 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.59 54.0 4.68e-01 100.0% 80.7%
3718188 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.59 52.0 4.78e-01 100.0% 90.0%
3263571 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 51.0 4.16e-01 100.0% 56.6%
3785582 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.57 51.0 4.22e-01 100.0% 76.4%
4024501 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 51.0 4.84e-01 100.0% 91.4%
3549481 247.1.1.38 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.56 33.0 3.48e-01 82.2% 63.7%
3508939 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.56 50.0 4.45e-01 100.0% 73.8%
3876027 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.56 49.0 4.22e-01 100.0% 63.3%
3747736 331.23.1.7 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.55 32.0 3.44e-01 82.2% 63.7%
5013239 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.55 49.0 4.60e-01 100.0% 96.4%
5044987 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 38.0 3.64e-01 100.0% 61.9%
5016315 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.54 47.0 4.28e-01 98.9% 87.2%
3617912 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.51 35.0 3.27e-01 83.3% 54.2%
3246192 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.51 41.0 3.04e-01 93.3% 89.6%
D2 high residues 115-231
PDB
Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00974.25 best Rhabdo_glycop_FD 116.3 1.20e-33 85.5% 100.0%
D3 medium residues 66-78_378-501
PDB
D4 medium residues 79-99_334-377
PDB