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virion_transmembrane_glycoprotein

Euk-Vir

Obodhiang_virus

virion_transmembrane_glycoprotein__YP_006200960__Obodhiang_virus__380160

Identity

Accession:: YP_006200960 ↗
Protein ID:: virion_transmembrane_glycoprotein
Kingdom:: euk

Quality

64.3 mean pLDDT

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-45_299-479

PDB

Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	44.4	2.30e-11	41.3%	42.1%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1841049	1086.1.1.1 ↗	beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › ASTN_2_hairpin	0.56	16.0	3.26e-01	73.8%	96.4%

D2 high residues 58-71_206-281

PDB

Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294

D3 medium residues 76-154

PDB

Domain cluster: rep: glycoprotein__YP_009362193__Nkolbisson_virus__380442__D82-138

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	74.0	2.00e-20	100.0%	77.5%

D4 medium residues 155-204

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1lmlA04	2.30.34.10	Mainly Beta › Roll › Leishmanolysin; domain 4 › Leishmanolysin domain 4	0.60	48.0	4.08e-01	100.0%	56.6%
8enbA01	2.10.90.10	Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines	0.57	41.0	3.62e-01	82.0%	88.0%
2covG00	2.60.40.2450	Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-xylanase, CBM31 domain	0.55	44.0	3.88e-01	100.0%	94.3%
2oz4A03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	42.0	3.71e-01	92.0%	90.4%
1zhxA03	2.40.160.120	Mainly Beta › Beta Barrel › Porin ›	0.53	38.0	2.67e-01	82.0%	51.8%
5lznA00	3.10.20.360	Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain	0.51	43.0	3.42e-01	100.0%	57.7%
4dooA01	3.50.70.10	Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase ›	0.50	38.0	2.89e-01	92.0%	75.2%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5036301	375.1.1.37 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon	0.61	36.0	3.94e-01	80.0%	72.5%
3260511	386.1.1.71 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2	0.60	42.0	4.08e-01	74.0%	70.9%
3612571	2498.1.1.14 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8	0.60	48.0	2.89e-01	100.0%	11.4%
3589899	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.59	36.0	3.80e-01	82.0%	66.7%
4572268	11.1.4.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Usher	0.59	43.0	3.91e-01	84.0%	89.3%
4820773	2484.1.1.70 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FtsA	0.58	43.0	3.26e-01	88.0%	45.1%
3262827	2498.1.1.14 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8	0.55	44.0	2.62e-01	100.0%	10.2%
5000687	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.54	41.0	3.98e-01	86.0%	84.5%
3719115	220.4.1.6 ↗	beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › Peptidase_M8	0.54	44.0	3.22e-01	100.0%	31.9%
3312716	220.1.1.172 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PRMT_N	0.52	37.0	3.13e-01	84.0%	91.4%
3224532	3534.1.1.3 ↗	beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF4505	0.52	41.0	3.61e-01	94.0%	86.7%
5043002	375.1.1.37 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon	0.51	37.0	3.88e-01	82.0%	84.4%
4944724	304.136.1.1 ↗	a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5	0.51	40.0	3.30e-01	100.0%	93.0%