←Back to structures

vlf-1

Euk-Vir

Clostera_anastomosis_granulovirus_B

vlf-1__YP_009506033__Clostera_anastomosis_granulovirus_B__1986290

Identity

Accession:: YP_009506033 ↗
Protein ID:: vlf-1
Kingdom:: euk

Quality

75.8 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Clostera_anastomosis_granulovirus_B

TaxID: 1986290

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-58_72-157

PDB

Domain cluster: rep: VLF-1__YP_006908609__Epinotia_aporema_granulovirus__166056__D7-38_57-138

D2 medium residues 203-299

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4p79A00	1.20.140.150	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 ›	0.56	45.0	3.65e-01	86.6%	93.4%
1fgyA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.55	42.0	3.90e-01	83.5%	97.6%
3tqeA02	3.30.70.250	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding	0.51	27.0	3.07e-01	77.3%	67.1%
2lxiA00	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.50	30.0	3.11e-01	82.5%	61.5%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3278982	101.1.8.0 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes	0.69	54.0	4.93e-01	84.5%	92.3%
5013304	101.1.8.0 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes	0.67	55.0	5.30e-01	100.0%	79.1%
3602838	101.1.8.0 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes	0.66	59.0	5.27e-01	100.0%	80.7%
2154862	2498.1.1.23 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49	0.57	47.0	2.89e-01	93.8%	95.4%
3393722	101.1.2.149 ↗	alpha arrays › HTH › HTH › winged helix domain › Costars	0.56	35.0	3.20e-01	92.8%	47.2%
4001618	633.23.1.14 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_3	0.54	43.0	3.40e-01	85.6%	96.9%
3556189	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.53	30.0	3.11e-01	81.4%	57.8%
4672256	101.1.2.101 ↗	alpha arrays › HTH › HTH › winged helix domain › Cdc6_C	0.53	45.0	4.26e-01	94.8%	97.4%
3194375	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.52	41.0	2.66e-01	85.6%	45.4%
5033599	304.4.1.82 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303	0.52	30.0	3.30e-01	81.4%	68.8%
3221746	633.23.1.0 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin	0.52	42.0	3.16e-01	87.6%	92.9%
5050129	101.1.2.101 ↗	alpha arrays › HTH › HTH › winged helix domain › Cdc6_C	0.52	42.0	4.05e-01	89.7%	98.2%
3940164	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.52	28.0	2.57e-01	78.4%	38.4%
4990676	101.1.2.101 ↗	alpha arrays › HTH › HTH › winged helix domain › Cdc6_C	0.52	40.0	3.94e-01	86.6%	97.3%
3316941	101.1.2.147 ↗	alpha arrays › HTH › HTH › winged helix domain › ORC4_C	0.50	41.0	3.93e-01	91.8%	96.5%